ggKbase home page

scnpilot_solids1_trim150_scaffold_1250_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1250_curated_1
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..468
DNA (468bp) protein (156aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase id=3038457 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
scnpilot_solids1_trim150_scaffold_1250_curated_2
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(465..1010)
DNA (546bp) protein (182aa)
carbonic anhydrase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B46E34
Carbonic anhydrase {ECO:0000313|EMBL:KGQ19109.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
transferase
scnpilot_solids1_trim150_scaffold_1250_curated_3
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1049..2458
DNA (1410bp) protein (470aa)
aldehyde dehydrogenase (EC:1.2.1.-); K00154 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
Aldehyde dehydrogenase n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z0M6_XANCT
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
scnpilot_solids1_trim150_scaffold_1250_curated_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2585..3442
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002DF4856
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV27928.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_1250_curated_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3435..4175
DNA (741bp) protein (247aa)
endonuclease; K05522 endonuclease VIII [EC:3.2.2.- 4.2.99.18]
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031B7645
Stenotrophomonas maltophilia strain ZBG7B contig_61, whole genome shotgun sequence {ECO:0000313|EMBL:KIP83390.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
scnpilot_solids1_trim150_scaffold_1250_curated_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4420..5190
DNA (771bp) protein (257aa)
xthA3; Exodeoxyribonuclease III (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
exodeoxyribonuclease III n=1 Tax=Xanthomonas sacchari RepID=UPI000262B174
Exodeoxyribonuclease III {ECO:0000313|EMBL:EJP78483.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
scnpilot_solids1_trim150_scaffold_1250_curated_7
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5284..5532)
DNA (249bp) protein (83aa)
Transglycosylase-associated protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFM0_SPHWW
transglycosylase-associated protein
Transglycosylase-associated protein {ECO:0000313|EMBL:ABQ71086.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_solids1_trim150_scaffold_1250_curated_8
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5716..6357
DNA (642bp) protein (214aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
16S rRNA methyltransferase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000316D54B
scnpilot_solids1_trim150_scaffold_1250_curated_9
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6419..7213
DNA (795bp) protein (265aa)
Putative chromosome partitioning protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WWX7_PSEUU
Chromosome (Plasmid) partitioning protein ParA {ECO:0000313|EMBL:KGQ19118.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
chromosome partitioning protein; K03496 chromosome partitioning protein
scnpilot_solids1_trim150_scaffold_1250_curated_10
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7210..8151
DNA (942bp) protein (314aa)
chromosome partitioning protein ParB n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI0003766BEA
Chromosome partitioning protein ParB {ECO:0000313|EMBL:KGM54249.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
chromosome partitioning protein; K03497 chromosome partitioning protein, ParB family
scnpilot_solids1_trim150_scaffold_1250_curated_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8165..8896
DNA (732bp) protein (244aa)
DPM1; dolichol-phosphate mannosyltransferase (EC:2.4.1.83); K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
Dolichol-phosphate mannosyltransferase {ECO:0000313|EMBL:CCH14648.1}; EC=2.4.1.83 {ECO:0000313|EMBL:CCH14648.1};; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
dolichol-phosphate mannosyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F87472
scnpilot_solids1_trim150_scaffold_1250_curated_12
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8893..9252
DNA (360bp) protein (120aa)
Lipid A Biosynthesis N-terminal domain family n=3 Tax=Xanthomonas oryzae pv. oryzae RepID=B2SS15_XANOP
Membrane protein {ECO:0000313|EMBL:KGM54251.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1250_curated_13
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9309..11105
DNA (1797bp) protein (599aa)
Putative uncharacterized protein n=2 Tax=Xanthomonas campestris pv. campestris RepID=Q4UP55_XANC8
Uncharacterized protein {ECO:0000313|EMBL:AKC80048.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1250_curated_14
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11274..11510
DNA (237bp) protein (79aa)
50S ribosomal protein L28 n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00030FF8EC
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
scnpilot_solids1_trim150_scaffold_1250_curated_15
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11524..11688
DNA (165bp) protein (55aa)
50S ribosomal protein L33 n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003083940
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
scnpilot_solids1_trim150_scaffold_1250_curated_16
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12722..13195)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Thauera phenylacetica B4P RepID=N6ZWD7_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO98802.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1250_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13245..14444)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=2 Tax=Proteobacteria RepID=F4G4S6_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84121.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_solids1_trim150_scaffold_1250_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14441..14584)
DNA (144bp) protein (48aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=F4G4S5_ALIDK
hypothetical protein; K06966
Uncharacterized protein {ECO:0000313|EMBL:AEB84120.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Displaying 18 items

View Taxonomy