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scnpilot_solids1_trim150_scaffold_3566_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_3566_curated_1
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..212
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-133-C04 RepID=UPI000361B595
Membrane protein {ECO:0000313|EMBL:KGO99891.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3566_curated_2
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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243..626
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Pseudomonas stutzeri RepID=UPI00036D4ACD
Amino acid-binding protein {ECO:0000313|EMBL:AHY40958.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3566_curated_3
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(646..1917)
DNA (1272bp) protein (424aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7); K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E5E58D
scnpilot_solids1_trim150_scaffold_3566_curated_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1917..2150)
DNA (234bp) protein (78aa)
BolA family protein n=6 Tax=Stenotrophomonas maltophilia RepID=G0K0X2_STEMA
BolA family protein
BolA family transcriptional regulator {ECO:0000313|EMBL:KDE91083.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
scnpilot_solids1_trim150_scaffold_3566_curated_5
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2217..3203
DNA (987bp) protein (329aa)
Arabinose 5-phosphate isomerase {ECO:0000256|PIRNR:PIRNR004692}; Short=API {ECO:0000256|PIRNR:PIRNR004692};; EC=5.3.1.13 {ECO:0000256|PIRNR:PIRNR004692};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
sugar phosphate isomerase involved in capsule formation, kpsf/gutq protein; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
Arabinose 5-phosphate isomerase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7H3V4_XANCT
scnpilot_solids1_trim150_scaffold_3566_curated_6
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3203..3748
DNA (546bp) protein (182aa)
NODE_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97055.1}; EC=3.1.3.45 {ECO:0000313|EMBL:KIQ97055.1};; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
3-deoxy-manno-octulosonate-8-phosphatase; K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
3-deoxy-manno-octulosonate-8-phosphatase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQP8_PSEUP
scnpilot_solids1_trim150_scaffold_3566_curated_7
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3745..4299
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UEM4_XANAP
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
Lipopolysaccharide export system protein LptC {ECO:0000256|HAMAP-Rule:MF_01915}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
scnpilot_solids1_trim150_scaffold_3566_curated_8
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4283..4804
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003124874
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
lipopolysaccharide transport periplasmic protein LptA; K09774 lipopolysaccharide export system protein LptA
scnpilot_solids1_trim150_scaffold_3566_curated_9
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4804..5523
DNA (720bp) protein (240aa)
ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
Probable abc transporter atp-binding protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UEM6_XANAP
Lipopolysaccharide ABC transporter, ATP-binding protein LptB {ECO:0000313|EMBL:KGQ17761.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
scnpilot_solids1_trim150_scaffold_3566_curated_10
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5599..6270
DNA (672bp) protein (224aa)
RNA polymerase factor sigma-54 (EC:2.7.7.6); K03092 RNA polymerase sigma-54 factor
RNA polymerase sigma54 factor n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A931B1
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
Displaying 10 items

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