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scnpilot_solids1_trim150_scaffold_808_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_808_curated_1
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..1253
DNA (1251bp) protein (417aa)
acyl-CoA dehydrogenase domain-containing protein; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7]
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WTT8_PSEUU
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids1_trim150_scaffold_808_curated_2
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1271..1819
DNA (549bp) protein (183aa)
GCN5-related N-acetyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WTT7_PSEUU
Acetyltransferase {ECO:0000313|EMBL:AKC87823.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
GCN5-like N-acetyltransferase
scnpilot_solids1_trim150_scaffold_808_curated_3
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1816..2457
DNA (642bp) protein (214aa)
glutathione S-transferase n=1 Tax=Xanthomonas sacchari RepID=UPI00026301A2
Glutathione S-transferase {ECO:0000313|EMBL:KGQ20406.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
glutathione S-transferase
scnpilot_solids1_trim150_scaffold_808_curated_4
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2505..4772
DNA (2268bp) protein (756aa)
transketolase domain-containing protein; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
MFS transporter n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5DE6B
MFS transporter {ECO:0000313|EMBL:KGM55882.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
scnpilot_solids1_trim150_scaffold_808_curated_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4817..6475)
DNA (1659bp) protein (553aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] id=12549839 bin=BDI species=Acidovorax ebreus genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
scnpilot_solids1_trim150_scaffold_808_curated_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6479..8086)
DNA (1608bp) protein (536aa)
fumarate reductase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037230ED
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein; K07077
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_solids1_trim150_scaffold_808_curated_7
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8246..9205)
DNA (960bp) protein (320aa)
folate-binding protein YgfZ n=1 Tax=Pseudomonas geniculata RepID=UPI00029B1FA1
Uncharacterized protein {ECO:0000313|EMBL:KGM52032.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
folate-binding protein YgfZ; K06980
scnpilot_solids1_trim150_scaffold_808_curated_8
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9443..9778
DNA (336bp) protein (112aa)
succinate dehydrogenase subunit C (EC:1.3.5.1)
succinate dehydrogenase n=1 Tax=Dyella ginsengisoli RepID=UPI0003449C5F
Succinate dehydrogenase {ECO:0000313|EMBL:AIF47698.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_solids1_trim150_scaffold_808_curated_9
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9775..10170
DNA (396bp) protein (132aa)
Succinate dehydrogenase, hydrophobic membrane anchor n=2 Tax=mine drainage metagenome RepID=T0Y8P2_9ZZZZ
Succinate dehydrogenase {ECO:0000313|EMBL:KGM55886.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
succinate dehydrogenase membrane anchor subunit; K00242 succinate dehydrogenase membrane anchor subunit
scnpilot_solids1_trim150_scaffold_808_curated_10
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10177..11964
DNA (1788bp) protein (596aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
succinate dehydrogenase, flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B56BDD
scnpilot_solids1_trim150_scaffold_808_curated_11
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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12048..12830
DNA (783bp) protein (261aa)
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4VY88_9GAMM
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_808_curated_12
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12870..13127
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000314B03A
Uncharacterized protein {ECO:0000313|EMBL:KGM55890.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein; K09159 hypothetical protein
scnpilot_solids1_trim150_scaffold_808_curated_13
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13078..13530
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8ZI69_XANCT
Membrane protein {ECO:0000313|EMBL:AJC48114.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_808_curated_14
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13554..14798
DNA (1245bp) protein (415aa)
ABC transporter-type lipoprotein-releasing protein n=4 Tax=Xanthomonas campestris RepID=B0RSH1_XANCB
Cell division protein FtsX {ECO:0000313|EMBL:KGM55892.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
lipoprotein releasing system transmembrane protein; K09808 lipoprotein-releasing system permease protein
scnpilot_solids1_trim150_scaffold_808_curated_15
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14791..15495
DNA (705bp) protein (235aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708, ECO:0000256|SAAS:SAAS00041694}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708, ECO:0000256|SAAS:SAAS00041671};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
ABC transporter ATP-binding subunit; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-]
ABC transporter ATP-binding subunit n=3 Tax=Stenotrophomonas maltophilia RepID=B2FL91_STRMK
scnpilot_solids1_trim150_scaffold_808_curated_16
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15729..18125
DNA (2397bp) protein (799aa)
Putative competence-related dna-transformation transporter protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UGZ7_XANAP
Transporter {ECO:0000313|EMBL:AJC48159.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
competence-related DNA-transformation transporter; K02238 competence protein ComEC
scnpilot_solids1_trim150_scaffold_808_curated_17
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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18177..18776
DNA (600bp) protein (200aa)
biopolymer transporter ExbB n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037078A3
Ferric siderophore transport system, biopolymer transport protein ExbB {ECO:0000313|EMBL:KGQ19288.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
scnpilot_solids1_trim150_scaffold_808_curated_18
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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18784..19230
DNA (447bp) protein (149aa)
Biopolymer transport ExbD protein n=2 Tax=Xanthomonas fuscans RepID=D4SSD6_9XANT
Biopolymer transporter {ECO:0000313|EMBL:KGO97754.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
exbD4; biopolymer transport ExbD protein; K03559 biopolymer transport protein ExbD
scnpilot_solids1_trim150_scaffold_808_curated_19
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19227..20978
DNA (1752bp) protein (584aa)
Lipid A export ATP-binding/permease protein MsbA {ECO:0000256|HAMAP-Rule:MF_01703}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01703};; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
lipid A ABC exporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-]
ATP-binding protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262B153
scnpilot_solids1_trim150_scaffold_808_curated_20
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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21060..21986
DNA (927bp) protein (309aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
lpxK; tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
tetraacyldisaccharide 4''''-kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D61EEF
scnpilot_solids1_trim150_scaffold_808_curated_21
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22035..22820
DNA (786bp) protein (262aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
3-deoxy-D-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WT11_PSEUU
scnpilot_solids1_trim150_scaffold_808_curated_22
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22813..23292
DNA (480bp) protein (160aa)
protein tyrosine phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48]
phosphotyrosine protein phosphatase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E205F1
Phosphotyrosine protein phosphatase {ECO:0000313|EMBL:AKC85504.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
scnpilot_solids1_trim150_scaffold_808_curated_23
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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23297..24574
DNA (1278bp) protein (426aa)
excinuclease ABC subunit C n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000319BF76
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
excinuclease ABC subunit C; K03703 excinuclease ABC subunit C
Displaying 23 items

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