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scnpilot_solids1_trim150_scaffold_1214_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1214_curated_1
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(50..757)
DNA (708bp) protein (236aa)
multidrug ABC transporter substrate-binding protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B483E1
Multidrug ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGQ18410.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein; K02004 putative ABC transport system permease protein
scnpilot_solids1_trim150_scaffold_1214_curated_2
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1311..2021)
DNA (711bp) protein (237aa)
ABC transporter related protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WRD6_PSEUU
ABC transporter; K02003 putative ABC transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADV26594.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_1214_curated_3
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2021..3592)
DNA (1572bp) protein (524aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WRD5_PSEUU
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADV26593.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_1214_curated_4
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3692..4402)
DNA (711bp) protein (237aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
psensor histidine kinase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B589CE
integral membrane sensor signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_1214_curated_5
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4419..5120)
DNA (702bp) protein (234aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WRD3_PSEUU
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADV26591.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_1214_curated_6
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5221..5562
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Xanthomonas vasicola RepID=UPI0001CBF91D
Transmembrane signal peptide protein {ECO:0000313|EMBL:KGQ18415.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein; K09922 hypothetical protein
scnpilot_solids1_trim150_scaffold_1214_curated_7
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5644..5946)
DNA (303bp) protein (101aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN43253.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
Predicted membrane protein id=2880717 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
scnpilot_solids1_trim150_scaffold_1214_curated_8
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5943..6770)
DNA (828bp) protein (276aa)
MazG family protein; K04765 ATP diphosphatase [EC:3.6.1.8]
Nucleoside triphosphate pyrophosphohydrolase MazG {ECO:0000313|EMBL:KGQ18700.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
MazG family protein id=2880719 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
scnpilot_solids1_trim150_scaffold_1214_curated_9
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6767..7558)
DNA (792bp) protein (264aa)
cysQ; sulfite synthesis pathway protein; K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
Putative sulfite synthesis pathway protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UEU6_XANAP
3'-5'-bisphosphate nucleotidase {ECO:0000313|EMBL:KGM53458.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
scnpilot_solids1_trim150_scaffold_1214_curated_10
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7545..8099)
DNA (555bp) protein (185aa)
nudE; adenosine nucleotide hydrolase NudE; K08312 ADP-ribose diphosphatase [EC:3.6.1.-]
ADP-ribose diphosphatase n=1 Tax=Xanthomonas sp. M97 RepID=UPI00039BC42F
Adenosine nucleotide hydrolase NudE {ECO:0000313|EMBL:KGQ18702.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
scnpilot_solids1_trim150_scaffold_1214_curated_11
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8153..9529
DNA (1377bp) protein (459aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; EC=2.6.1.62 {ECO:0000256|HAMAP-Rule:MF_00834};; 7,8-diamino-pelargonic acid aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; 7,8-diaminononanoate synthase {ECO:0000256|HAMAP-Rule:MF_00834}; Diaminopelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00834}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonen
adenosylmethionine-8-amino-7-oxononanoate aminotransferase; K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVM5_PSEUU
scnpilot_solids1_trim150_scaffold_1214_curated_12
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9582..10313
DNA (732bp) protein (244aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
16S rRNA methyltransferase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002DE81F7
scnpilot_solids1_trim150_scaffold_1214_curated_13
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10350..10820)
DNA (471bp) protein (157aa)
chemotaxis protein CheW n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B45EC8
Chemotaxis protein CheW {ECO:0000313|EMBL:KGM53462.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
Chemotaxis-related protein; K06598 chemosensory pili system protein ChpC
scnpilot_solids1_trim150_scaffold_1214_curated_14
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10828..11805)
DNA (978bp) protein (326aa)
glutamate methyltransferase n=1 Tax=Xanthomonas oryzae RepID=UPI000378D606
Chemotaxis protein {ECO:0000313|EMBL:KGO98511.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
chemotaxis-like protein; K06597 chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
scnpilot_solids1_trim150_scaffold_1214_curated_15
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11802..15767)
DNA (3966bp) protein (1322aa)
chemotaxis protein CheY n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B49081
Uncharacterized protein {ECO:0000313|EMBL:EYR66340.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
pilL; two-component system sensor histidine kinase-response regulator hybrid protein pill; K02487 type IV pili sensor histidine kinase and response regulator; K06596 chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
scnpilot_solids1_trim150_scaffold_1214_curated_16
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17764..19218)
DNA (1455bp) protein (485aa)
Twitching motility protein PilJ n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0T1R4_XANCT
Chemotaxis protein {ECO:0000313|EMBL:KGM53463.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
pilus biogenesis protein; K02660 twitching motility protein PilJ
Displaying 16 items

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