ggKbase home page

scnpilot_solids1_trim150_scaffold_1225_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1225_curated_1
Xanthomonas fragariae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

152..601
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0FLC1_9XANT
Uncharacterized protein {ECO:0000313|EMBL:ENZ94169.1}; TaxID=1131451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fragariae LMG 25863.;"
hypothetical protein; K09005 hypothetical protein
scnpilot_solids1_trim150_scaffold_1225_curated_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(623..775)
DNA (153bp) protein (51aa)
Rubredoxin n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRY8_9GAMM
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
rubredoxin
scnpilot_solids1_trim150_scaffold_1225_curated_3
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

909..2198
DNA (1290bp) protein (430aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
glutamate-1-semialdehyde-2,1-aminomutase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVY8_PSEUU
scnpilot_solids1_trim150_scaffold_1225_curated_4
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2207..3091
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E8027D
Uncharacterized protein {ECO:0000313|EMBL:KFN44333.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
Ion transport protein
scnpilot_solids1_trim150_scaffold_1225_curated_5
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3100..4227
DNA (1128bp) protein (376aa)
Cys/Met metabolism pyridoxal-phosphate-dependent protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UN18_PSEUP
Cys/Met metabolism pyridoxal-phosphate-dependent protein
Cys/Met metabolism pyridoxal-phosphate-dependent protein {ECO:0000313|EMBL:AER55329.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_solids1_trim150_scaffold_1225_curated_6
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4232..5464)
DNA (1233bp) protein (411aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
argD; acetylornithine transaminase (EC:2.6.1.11); K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
acetylornithine aminotransferase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00036BBBDA
scnpilot_solids1_trim150_scaffold_1225_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5466..5885)
DNA (420bp) protein (140aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDT4_9GAMM
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EIL97625.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
lactoylglutathione lyase-like lyase
scnpilot_solids1_trim150_scaffold_1225_curated_8
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5937..6758)
DNA (822bp) protein (274aa)
Short chain dehydrogenase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTC5_PSEUP
short chain dehydrogenase; K13775 citronellol/citronellal dehydrogenase
Short chain dehydrogenase {ECO:0000313|EMBL:AER57371.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_solids1_trim150_scaffold_1225_curated_9
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6818..8740
DNA (1923bp) protein (641aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037CDB82
phosphoesterase PA-phosphatase-like protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1225_curated_10
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8826..10178)
DNA (1353bp) protein (451aa)
mpl; UDP-N-acetylmuramate-L-alanine ligase; K02558 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase n=5 Tax=Xanthomonas axonopodis RepID=UPI0002D3A5C4
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1225_curated_11
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10301..10879)
DNA (579bp) protein (193aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3]
adenylate kinase n=1 Tax=Xanthomonas sacchari RepID=UPI0002630624
scnpilot_solids1_trim150_scaffold_1225_curated_12
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10995..12251
DNA (1257bp) protein (419aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacte
phosphofructokinase; K00850 6-phosphofructokinase [EC:2.7.1.11]
Phosphofructokinase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K1X0_STEMA
scnpilot_solids1_trim150_scaffold_1225_curated_13
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12318..13124
DNA (807bp) protein (269aa)
Peptidoglycan-binding domain-containing protein n=1 Tax=Thauera sp. 63 RepID=N6Y1L3_9RHOO
Peptidoglycan-binding domain-containing protein {ECO:0000313|EMBL:ENO76302.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
peptidoglycan binding domain-containing protein
scnpilot_solids1_trim150_scaffold_1225_curated_14
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

13218..13442
DNA (225bp) protein (75aa)
UPF0235 protein OsccyDRAFT_1510 n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GR42_9CYAN
UPF0235 protein OsccyDRAFT_1510 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=864702 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanobacterium JSC-12.;"
hypothetical protein; K09131 hypothetical protein
scnpilot_solids1_trim150_scaffold_1225_curated_15
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13450..13953)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Xanthomonas sacchari RepID=UPI0002630627
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1225_curated_16
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14176..14745
DNA (570bp) protein (190aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
V-type H(+)-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1]
pyrophosphatase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000314AC57
Displaying 16 items

View Taxonomy