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SCNpilot_solid_2_scaffold_28

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Displaying items 1-30 of 211 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_2_scaffold_28_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..608
DNA (606bp) protein (202aa)
Conjugative relaxase domain-containing protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIW7_AFIFE
Conjugative relaxase domain-containing protein {ECO:0000313|EMBL:EKS28409.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afi
ATP-dependent exoDNAse
SCNpilot_solid_2_scaffold_28_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

662..922
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLK4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28410.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_solid_2_scaffold_28_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

930..1595
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NH82_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS28411.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_solid_2_scaffold_28_4
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1763..3454
DNA (1692bp) protein (564aa)
Resolvase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SMV6_NITWN rbh
resolvase rbh
Resolvase {ECO:0000313|EMBL:ABA06385.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb
SCNpilot_solid_2_scaffold_28_trna_2
unknown

Not on your lists

comp(3401..3472)
DNA (72bp)
transferRNA
SCNpilot_solid_2_scaffold_28_5
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3677..3958)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6A0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI51847.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia
hypothetical protein
SCNpilot_solid_2_scaffold_28_6
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3992..5065)
DNA (1074bp) protein (358aa)
Lysine 2,3-aminomutase YodO family protein {ECO:0000313|EMBL:EFI51846.1}; EC=5.4.3.2 {ECO:0000313|EMBL:EFI51846.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; B
kamA; L-lysine 2,3-aminomutase KamA (EC:5.4.3.2) rbh
Lysine 2,3-aminomutase YodO family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V699_9BRAD rbh
SCNpilot_solid_2_scaffold_28_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5050..5976)
DNA (927bp) protein (309aa)
lysyl-tRNA synthetase (EC:6.1.1.6); K04568 lysyl-tRNA synthetase, class II [EC:6.1.1.6] rbh
Lysine--tRNA ligase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V698_9BRAD rbh
Elongation factor P--(R)-beta-lysine ligase {ECO:0000313|EMBL:CEG08152.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia f
SCNpilot_solid_2_scaffold_28_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6229..6795
DNA (567bp) protein (189aa)
Elongation factor P n=1 Tax=Afipia sp. 1NLS2 RepID=D6V697_9BRAD rbh
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiacea
efp; elongation factor P; K02356 elongation factor P rbh
SCNpilot_solid_2_scaffold_28_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6858..7511)
DNA (654bp) protein (218aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria;
ubiquinol-cytochrome c reductase, iron-sulfur subunit; K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] rbh
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQD0_AFIFE rbh
SCNpilot_solid_2_scaffold_28_10
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7588..8859
DNA (1272bp) protein (424aa)
Lytic murein transglycosylase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V696_9BRAD rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:EFI51843.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="A
lytic murein transglycosylase rbh
SCNpilot_solid_2_scaffold_28_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8867..10708)
DNA (1842bp) protein (614aa)
recJ; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] rbh
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Afipia sp. 1NLS2 RepID=D6V695_9BRAD rbh
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EFI51842.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afip
SCNpilot_solid_2_scaffold_28_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10769..11485)
DNA (717bp) protein (239aa)
haloacid dehalogenase; K01560 2-haloacid dehalogenase [EC:3.8.1.2] rbh
Haloacid dehalogenase, type II n=2 Tax=Oligotropha carboxidovorans RepID=B6JHH2_OLICO rbh
Putative haloacid dehalogenase {ECO:0000313|EMBL:AEI06715.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha ca
SCNpilot_solid_2_scaffold_28_13
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11497..12492)
DNA (996bp) protein (332aa)
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11); K02446 fructose-1,6-bisphosphatase II [EC:3.1.3.11] rbh
Fructose-1,6-bisphosphatase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V693_9BRAD rbh
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_solid_2_scaffold_28_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12547..13869)
DNA (1323bp) protein (441aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiace
hom; homoserine dehydrogenase Hom (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] rbh
Homoserine dehydrogenase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V692_9BRAD rbh
SCNpilot_solid_2_scaffold_28_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13894..15111)
DNA (1218bp) protein (406aa)
aminotransferase (EC:2.6.1.-); K14261 alanine-synthesizing transaminase [EC:2.6.1.-] rbh
Aminotransferase class I and II n=1 Tax=Afipia sp. 1NLS2 RepID=D6V691_9BRAD rbh
Aminotransferase class I and II {ECO:0000313|EMBL:EFI51838.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;
SCNpilot_solid_2_scaffold_28_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15385..15687)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V690_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG08160.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein
SCNpilot_solid_2_scaffold_28_17
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15921..17720
DNA (1800bp) protein (600aa)
phbC; poly-beta-hydroxybutyrate polymerase PhbC (EC:2.3.1.-); K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-] rbh
Poly(R)-hydroxyalkanoic acid synthase, class I n=1 Tax=Afipia sp. 1NLS2 RepID=D6V689_9BRAD rbh
Poly(R)-hydroxyalkanoic acid synthase, class I {ECO:0000313|EMBL:EFI51836.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afi
SCNpilot_solid_2_scaffold_28_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17864..18262
DNA (399bp) protein (133aa)
Membrane-associated protein in eicosanoid and glutathione metabolism n=1 Tax=Afipia sp. 1NLS2 RepID=D6V688_9BRAD
MAPEG family protein {ECO:0000313|EMBL:CEG08162.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disea
hypothetical protein
SCNpilot_solid_2_scaffold_28_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18300..19358)
DNA (1059bp) protein (353aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_0015
argC; N-acetyl-gamma-glutamyl-phosphate reductase ArgC (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] rbh
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V687_9BRAD rbh
SCNpilot_solid_2_scaffold_28_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19595..20131)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NCV4_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS28432.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
DedA family protein rbh
SCNpilot_solid_2_scaffold_28_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20311..22380
DNA (2070bp) protein (690aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=1035 species="Bacte
parE; DNA topoisomerase IV subunit B (EC:5.99.1.-); K02622 topoisomerase IV subunit B [EC:5.99.1.-] rbh
DNA topoisomerase 4 subunit B n=1 Tax=Afipia sp. 1NLS2 RepID=D6V685_9BRAD rbh
SCNpilot_solid_2_scaffold_28_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22377..23549)
DNA (1173bp) protein (391aa)
Monooxygenase FAD-binding n=1 Tax=Afipia sp. 1NLS2 RepID=D6V684_9BRAD rbh
Monooxygenase FAD-binding {ECO:0000313|EMBL:EFI51831.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
FAD-dependent monooxygenase rbh
SCNpilot_solid_2_scaffold_28_23
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23911..25323
DNA (1413bp) protein (471aa)
cshA; DEAD/DEAH box helicase (EC:3.6.1.-) rbh
DEAD/DEAH box helicase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V683_9BRAD rbh
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:EFI51830.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1
SCNpilot_solid_2_scaffold_28_24
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25433..26500
DNA (1068bp) protein (356aa)
Diguanylate cyclase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V682_9BRAD rbh
Diguanylate cyclase {ECO:0000313|EMBL:EFI51829.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
diguanylate cyclase; K13590 diguanylate cyclase rbh
SCNpilot_solid_2_scaffold_28_25
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26513..26920)
DNA (408bp) protein (136aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V681_9BRAD
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:EFI51828.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afi
iscA; iron-sulfur cluster assembly accessory protein; K13628 iron-sulfur cluster assembly protein
SCNpilot_solid_2_scaffold_28_26
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26998..27384)
DNA (387bp) protein (129aa)
FeS assembly SUF system protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V680_9BRAD
FeS assembly SUF system protein {ECO:0000313|EMBL:EFI51827.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;
FeS assembly SUF system protein
SCNpilot_solid_2_scaffold_28_27
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27381..28646)
DNA (1266bp) protein (422aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=666684 species="Bacteria; Proteob
cysteine desulfurase (EC:2.8.1.7 4.4.1.16); K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] rbh
Cysteine desulfurase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V679_9BRAD rbh
SCNpilot_solid_2_scaffold_28_28
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28625..29935)
DNA (1311bp) protein (437aa)
FeS assembly protein SufD n=1 Tax=Afipia sp. 1NLS2 RepID=D6V678_9BRAD rbh
FeS assembly protein SufD {ECO:0000313|EMBL:EFI51825.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
sufD; FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD rbh
SCNpilot_solid_2_scaffold_28_29
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29948..30706)
DNA (759bp) protein (253aa)
FeS assembly ATPase SufC n=1 Tax=Afipia sp. 1NLS2 RepID=D6V677_9BRAD rbh
Putative ATP-dependent transporter SufC {ECO:0000313|EMBL:CEG08172.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis
sufC; FeS assembly ATPase protein SufC; K09013 Fe-S cluster assembly ATP-binding protein rbh
Displaying items 1-30 of 211 in total

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