ggKbase home page

SCNpilot_solid_2_scaffold_228

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_2_scaffold_228_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108..644)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6I3_9BRAD rbh
ABC-type molybdate transport system, ATPase component {ECO:0000313|EMBL:CEG08064.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source
hypothetical protein
SCNpilot_solid_2_scaffold_228_2
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

792..1682
DNA (891bp) protein (297aa)
Rare lipoprotein A n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6I2_9BRAD rbh
Rare lipoprotein A {ECO:0000313|EMBL:EFI51929.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rare lipoprotein A; K03642 rare lipoprotein A rbh
SCNpilot_solid_2_scaffold_228_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1763..3028
DNA (1266bp) protein (422aa)
penicillin-binding protein 6 (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] rbh
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6I1_9BRAD rbh
D-alanyl-D-alanine carboxypeptidase DacC {ECO:0000313|EMBL:CEG08066.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia feli
SCNpilot_solid_2_scaffold_228_4
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3032..3718
DNA (687bp) protein (229aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=666684 species="Bacteria; Proteobacteria; Alph
tmk; thymidylate kinase Tmk (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9] rbh
Thymidylate kinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6I0_9BRAD rbh
SCNpilot_solid_2_scaffold_228_5
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3715..4758
DNA (1044bp) protein (348aa)
DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] rbh
DNA polymerase III subunit delta n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6H9_9BRAD rbh
DNA polymerase III subunit delta {ECO:0000313|EMBL:EFI51926.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.
SCNpilot_solid_2_scaffold_228_6
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4804..6375
DNA (1572bp) protein (524aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:
metG; methionine-tRNA ligase MetG (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] rbh
Methionine--tRNA ligase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6H8_9BRAD rbh
SCNpilot_solid_2_scaffold_228_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6375..7169
DNA (795bp) protein (265aa)
deoxyribonuclease (EC:3.1.21.-); K03424 TatD DNase family protein [EC:3.1.21.-] rbh
Hydrolase, TatD family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6H7_9BRAD rbh
Hydrolase, TatD family {ECO:0000313|EMBL:EFI51924.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_solid_2_scaffold_228_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7166..7966
DNA (801bp) protein (267aa)
Hydrolase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6H6_9BRAD rbh
Hydrolase {ECO:0000313|EMBL:EFI51923.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hydrolase; K06167 PhnP protein rbh
SCNpilot_solid_2_scaffold_228_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8143..9462)
DNA (1320bp) protein (440aa)
rkpK2; UDP-glucose 6-dehydrogenase RkpK (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] rbh
UDP-glucose 6-dehydrogenase RkpK {ECO:0000313|EMBL:AEI06619.1}; EC=1.1.1.22 {ECO:0000313|EMBL:AEI06619.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizo
UDP-glucose 6-dehydrogenase RkpK n=2 Tax=Oligotropha carboxidovorans RepID=B6JEC0_OLICO rbh
SCNpilot_solid_2_scaffold_228_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9518..10324)
DNA (807bp) protein (269aa)
FkbM family methyltransferase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIK6_AFIFE rbh
FkbM family methyltransferase {ECO:0000313|EMBL:EKS28274.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53
FkbM family methyltransferase
SCNpilot_solid_2_scaffold_228_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10343..11776)
DNA (1434bp) protein (478aa)
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase {ECO:0000313|EMBL:EFI51918.1}; EC=2.7.7.13 {ECO:0000313|EMBL:EFI51918.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphapr
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6H1_9BRAD rbh
manC1; mannose-1-phosphate guanylyltransferase, bifunctional protein ManC rbh
SCNpilot_solid_2_scaffold_228_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11818..12576)
DNA (759bp) protein (253aa)
Sugar transferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6H0_9BRAD rbh
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase {ECO:0000313|EMBL:CEG08075.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afi
pss; exopolysaccharide production protein Pss rbh
SCNpilot_solid_2_scaffold_228_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13257..13994
DNA (738bp) protein (246aa)
putative serine/threonine-protein phosphatase; K07313 serine/threonine protein phosphatase 1 [EC:3.1.3.16] rbh
Metallophosphoesterase n=2 Tax=Oligotropha carboxidovorans RepID=B6JEB6_OLICO rbh
Serine/threonine-protein phosphatase 1 {ECO:0000313|EMBL:CEG08077.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis
SCNpilot_solid_2_scaffold_228_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14078..14650
DNA (573bp) protein (191aa)
Polysaccharide export protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6G8_9BRAD rbh
Polysaccharide export protein {ECO:0000313|EMBL:EFI51915.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="A
putative polysaccharide biosynthesis/export; K01991 polysaccharide export outer membrane protein rbh
SCNpilot_solid_2_scaffold_228_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14906..16318
DNA (1413bp) protein (471aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6G7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI51914.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein rbh
SCNpilot_solid_2_scaffold_228_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16353..18620
DNA (2268bp) protein (756aa)
Capsular exopolysaccharide family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6G6_9BRAD rbh
Tyrosine-protein kinase ptk {ECO:0000313|EMBL:CEG08080.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratc
exopolysaccharide biosynthesis protein rbh
SCNpilot_solid_2_scaffold_228_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18617..20023
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6G5_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG08081.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein rbh
SCNpilot_solid_2_scaffold_228_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20034..21119
DNA (1086bp) protein (362aa)
Glycosyl transferase group 1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6G4_9BRAD rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:EFI51911.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
glycosyl transferase family protein rbh
SCNpilot_solid_2_scaffold_228_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21148..22197
DNA (1050bp) protein (350aa)
Acyltransferase 3 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6G3_9BRAD rbh
Acyltransferase 3 {ECO:0000313|EMBL:EFI51910.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein rbh
SCNpilot_solid_2_scaffold_228_20
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22200..23642
DNA (1443bp) protein (481aa)
Polysaccharide biosynthesis protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6G2_9BRAD rbh
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EFI51909.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NL
putative polysaccharide export protein rbh
SCNpilot_solid_2_scaffold_228_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23643..24743)
DNA (1101bp) protein (367aa)
Beta-xylanase {ECO:0000256|RuleBase:RU361174}; EC=3.2.1.8 {ECO:0000256|RuleBase:RU361174};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.
glycoside hydrolase, family 10; K01181 endo-1,4-beta-xylanase [EC:3.2.1.8] rbh
Endo-1,4-beta-xylanase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6G1_9BRAD rbh
SCNpilot_solid_2_scaffold_228_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24908..25705
DNA (798bp) protein (266aa)
Glycosyl transferase, WecB/TagA/CpsF family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6G0_9BRAD rbh
Glycosyl transferase, WecB/TagA/CpsF family {ECO:0000313|EMBL:EFI51907.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia
WecB/TagA/CpsF family glycosyl transferase rbh
SCNpilot_solid_2_scaffold_228_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25702..26961
DNA (1260bp) protein (420aa)
Glycosyl transferase group 1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F9_9BRAD rbh
UDP-D-galactose:(Glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase {ECO:0000313|EMBL:CEG08087.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiace
glycosyl transferase rbh
SCNpilot_solid_2_scaffold_228_24
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26979..28202
DNA (1224bp) protein (408aa)
glycosyl transferase family protein; K13668 phosphatidylinositol alpha-1,6-mannosyltransferase [EC:2.4.1.-] rbh
Glycosyl transferase group 1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F8_9BRAD rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:EFI51905.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_solid_2_scaffold_228_25
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28299..28616
DNA (318bp) protein (106aa)
Putative lipoprotein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F7_9BRAD
Putative lipoprotein {ECO:0000313|EMBL:EFI51904.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp.
hypothetical protein
SCNpilot_solid_2_scaffold_228_26
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28711..29655
DNA (945bp) protein (315aa)
Methyltransferase type 11 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F6_9BRAD rbh
Methyltransferase type 11 {ECO:0000313|EMBL:EFI51903.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein rbh
SCNpilot_solid_2_scaffold_228_27
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29666..30373)
DNA (708bp) protein (236aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine
7-cyano-7-deazaguanine synthase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F5_9BRAD rbh
ExsB protein; K06920 queuosine biosynthesis protein QueC rbh
SCNpilot_solid_2_scaffold_228_28
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30500..31339
DNA (840bp) protein (280aa)
mazG; NTP pyrophosphohydrolase MazG; K04765 ATP diphosphatase [EC:3.6.1.8] rbh
MazG family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F4_9BRAD rbh
MazG family protein {ECO:0000313|EMBL:EFI51901.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_solid_2_scaffold_228_29
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31342..32736)
DNA (1395bp) protein (465aa)
GTPase HflX n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F3_9BRAD rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizob
hflX; GTP-binding protein HflX; K03665 GTP-binding protein HflX rbh
SCNpilot_solid_2_scaffold_228_30
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32746..32994)
DNA (249bp) protein (83aa)
RNA-binding protein Hfq n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F2_9BRAD
hfq; RNA-binding protein Hfq; K03666 host factor-I protein
RNA-binding protein Hfq {ECO:0000255|HAMAP-Rule:MF_00436}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carbo
Displaying items 1-30 of 60 in total

View Taxonomy