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SCNpilot_solid_2_scaffold_159_61

Organism: SCNPILOT_SOLID_2_Afipia__34

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: comp(52479..53048)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Afipia felis ATCC 53690 RepID=K8NI79_AFIFE similarity UNIREF
DB: UNIREF100
  • Identity: 87.3
  • Coverage: 189.0
  • Bit_score: 325
  • Evalue 3.30e-86
  • rbh
RNA polymerase sigma factor CarQ {ECO:0000313|EMBL:CEG08526.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat s similarity UNIPROT
DB: UniProtKB
  • Identity: 87.3
  • Coverage: 189.0
  • Bit_score: 327
  • Evalue 1.60e-86
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 79.4
  • Coverage: 189.0
  • Bit_score: 298
  • Evalue 1.30e-78

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Taxonomy

Afipia felis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 570
TTGAGTGCAACACCGGCCGCATCGGATGAATCGCTGATCGGCCGCATTGCCCTGGGCGATCGCCTCGCCATGCAGGTTCTCTACGGACGGCACCATGTCCGCGTTTATCGGTTCGCATTGCGTCTGGTGCGTCAGGAACAGGTCGCCGAGGACCTCATCAGCGAGGTGTTTCTGGATGCATGGCGTCAGGCCGGGCAGTTCGAAGGGCGTTCCACCGTCTCGACCTGGCTGCTGGCGATCACGAGATTCAAGGCGTTGTCGGCGCTGCGCAACAAGAAGGACGCAGAACTCGACGACAAAACGGCAGCGGCGATCGAGGACACGGCCGGCGATCCGGGGGCCATGATCGCCAGGAAGGATACCGGGAAGGTGCTGCGCAATTGTCTGGCAAGGCTGTCGCGGGACCATCGCGAGATTGTCGATCTCGTCTACTACCACGAGAAGTCCGTGGAGGAGGTCGCCAGGATCGTCGGTATCCCGGAGAACACAGTGAAGACGCGCCTGTTCGACGCGCGCAAGAAACTGGCCGAACTTCTGAACGAAGCCGGCGTGGAGCGAGGCTGGCCATGA
PROTEIN sequence
Length: 190
LSATPAASDESLIGRIALGDRLAMQVLYGRHHVRVYRFALRLVRQEQVAEDLISEVFLDAWRQAGQFEGRSTVSTWLLAITRFKALSALRNKKDAELDDKTAAAIEDTAGDPGAMIARKDTGKVLRNCLARLSRDHREIVDLVYYHEKSVEEVARIVGIPENTVKTRLFDARKKLAELLNEAGVERGWP*