ggKbase home page

SCNpilot_BF_INOC_scaffold_742

Search features with annotation key words

Displaying items 1-30 of 139 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_742_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136..738
DNA (603bp) protein (201aa)
DsbA oxidoreductase {ECO:0000313|EMBL:CCE96416.1}; EC=2.5.1.18 {ECO:0000313|EMBL:CCE96416.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhiz
DsbA oxidoreductase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A836_RHIFH
DsbA oxidoreductase
SCNpilot_BF_INOC_scaffold_742_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

888..1106
DNA (219bp) protein (73aa)
Transposase IS4 family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GAH1_ALIDK
transposase IS4 family protein
Transposase IS4 family protein {ECO:0000313|EMBL:AEB84610.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphi
SCNpilot_BF_INOC_scaffold_742_3
Oligella urethralis, Oligella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1130..2269)
DNA (1140bp) protein (380aa)
adhB; iron-containing alcohol dehydrogenase AdhB (EC:1.1.1.-)
alcohol dehydrogenase n=1 Tax=Oligella urethralis RepID=UPI00036CC079
Alcohol dehydrogenase {ECO:0000313|EMBL:KGF30100.1}; TaxID=1401065 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Oligella.;" source="Oligella urethralis DNF00
SCNpilot_BF_INOC_scaffold_742_4
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2462..2920
DNA (459bp) protein (153aa)
Histidine triad (HIT) protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRL8_ALIDB
Histidine triad (HIT) protein {ECO:0000313|EMBL:EXU79713.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquati
histidine triad (hit) protein
SCNpilot_BF_INOC_scaffold_742_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2917..3966
DNA (1050bp) protein (350aa)
peptidase S58 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003615FA2
L-aminopeptidase/D-esterase {ECO:0000313|EMBL:GAD24804.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR
peptidase s58 dmpa
SCNpilot_BF_INOC_scaffold_742_6
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3963..5339
DNA (1377bp) protein (459aa)
TRAP transporter solute receptor, TAXI family n=1 Tax=Variovorax sp. CF313 RepID=J3CVS7_9BURK
putative TRAP transporter solute receptor, TAXI family Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
trap transporter solute receptor, taxi family
SCNpilot_BF_INOC_scaffold_742_7
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5385..6422)
DNA (1038bp) protein (346aa)
ansB1; periplasmic l-asparaginase ii (EC:3.5.1.1)
L-asparaginase type II family protein n=1 Tax=Polaromonas sp. CF318 RepID=J2TIF4_9BURK
L-asparaginase type II family protein {ECO:0000313|EMBL:EJL78317.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromona
SCNpilot_BF_INOC_scaffold_742_8
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6434..8227)
DNA (1794bp) protein (598aa)
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00036CDCAA
rhlE1; ATP-dependent RNA helicase
SCNpilot_BF_INOC_scaffold_742_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8466..10259)
DNA (1794bp) protein (598aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8Q7_ALIDK
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:GAO26811.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus s
SCNpilot_BF_INOC_scaffold_742_10
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10299..11036)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002EBDFEC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGJ10075.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
SCNpilot_BF_INOC_scaffold_742_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11060..11380)
DNA (321bp) protein (107aa)
Regulatory protein, FmdB family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CWY0_VARPS
FmdB family regulatory protein
Regulatory protein, FmdB family {ECO:0000313|EMBL:ACS20737.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax par
SCNpilot_BF_INOC_scaffold_742_12
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11479..12957)
DNA (1479bp) protein (493aa)
Na+/solute symporter n=1 Tax=Acidovorax sp. NO-1 RepID=H0BYF7_9BURK
Na+/solute symporter Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
Na+/solute symporter
SCNpilot_BF_INOC_scaffold_742_13
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13078..14646)
DNA (1569bp) protein (523aa)
ubiquinone biosynthesis protein UbiB n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036CE464
2-polyprenylphenol 6-hydroxylase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_742_14
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14792..15334)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000364283F
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_742_15
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15467..16465)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI00030E3E71
Preprotein translocase subunit Tim44 {ECO:0000313|EMBL:KGH13871.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas tes
import inner membrane translocase, subunit
SCNpilot_BF_INOC_scaffold_742_16
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16527..17261)
DNA (735bp) protein (245aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-meth
ubiquinone/menaquinone biosynthesis methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036E9023
ubiquinone/menaquinone biosynthesis methyltransferase
SCNpilot_BF_INOC_scaffold_742_17
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17366..19018
DNA (1653bp) protein (551aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Polaromonas sp. CF318 RepID=J3D9J4_9BURK
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EJL87396.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromon
beta-lactamase-like protein
SCNpilot_BF_INOC_scaffold_742_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19541..19705)
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000369144F
Uncharacterized protein {ECO:0000313|EMBL:GAD23858.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
SCNpilot_BF_INOC_scaffold_742_19
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19851..20768
DNA (918bp) protein (306aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; A
Cysteine synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRX5_ALIDB
cysteine synthase
SCNpilot_BF_INOC_scaffold_742_20
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20860..21267
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036CBFAB
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_742_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21296..22639
DNA (1344bp) protein (448aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
(dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Brachymonas chironomi RepID=UPI00036E11E5
miaB; tRNA-i(6)A37 modification enzyme MiaB
SCNpilot_BF_INOC_scaffold_742_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22807..24351
DNA (1545bp) protein (515aa)
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRM2_ALIDB
ABC transporter
Sugar ATP binding protein {ECO:0000313|EMBL:GAO27258.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus
SCNpilot_BF_INOC_scaffold_742_23
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24338..25402
DNA (1065bp) protein (355aa)
Inner-membrane translocator n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7E9_ACIDE
Sugar ABC transporter permease {ECO:0000313|EMBL:KJA10192.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax tempe
inner-membrane translocator
SCNpilot_BF_INOC_scaffold_742_24
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25402..26322
DNA (921bp) protein (307aa)
Candidate Uncharacterized ABC type transport system, permease component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XY22_RAMTT
ABC transporter permease {ECO:0000313|EMBL:KJA10191.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;
ABC transporter permease
SCNpilot_BF_INOC_scaffold_742_25
unknown

Not on your lists

26322..26498
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_742_26
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26545..27702
DNA (1158bp) protein (386aa)
membrane protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036E9DB6
basic membrane lipoprotein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
basic membrane lipoprotein
SCNpilot_BF_INOC_scaffold_742_27
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28105..28767)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI000377082F
DSBA oxidoreductase {ECO:0000313|EMBL:KGM40078.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_742_28
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28930..30084)
DNA (1155bp) protein (385aa)
alpha/beta hydrolase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00036FB283
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:GAD23873.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax
alpha/beta hydrolase fold protein
SCNpilot_BF_INOC_scaffold_742_29
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30361..30759
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00037686AC
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_742_30
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30844..31824)
DNA (981bp) protein (327aa)
quinone oxidoreductase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395CEEE
alcohol dehydrogenase
Alcohol dehydrogenase, zinc-binding domain protein {ECO:0000313|EMBL:ABM34025.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sou
Displaying items 1-30 of 139 in total

View Taxonomy