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scnpilot_p_inoc_scaffold_1823

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1823_1

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265..675
DNA (411bp) protein (137aa)
XRE family transcriptional regulator n=1 Tax=uncultured bacterium RepID=K2EDQ3_9BACT
XRE family transcriptional regulator {ECO:0000313|EMBL:EKD96629.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1823_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(712..1905)
DNA (1194bp) protein (398aa)
UPI0003D3D126 related cluster n=1 Tax=unknown RepID=UPI0003D3D126 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD22565.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
scnpilot_p_inoc_scaffold_1823_3
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2196..3434)
DNA (1239bp) protein (413aa)
serine--glyoxylate transaminase (EC:2.6.1.45)
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3D421_9BURK rbh
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase {ECO:0000313|EMBL:EJL84284.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacterace
scnpilot_p_inoc_scaffold_1823_4
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3570..4265
DNA (696bp) protein (232aa)
Transcriptional regulator, GntR family-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5M1_RAMTT
GntR family transcriptional regulator
Transcriptional regulator, GntR family-like protein {ECO:0000313|EMBL:AEG92717.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" s
scnpilot_p_inoc_scaffold_1823_5
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4276..4980)
DNA (705bp) protein (235aa)
Asp/Glu/hydantoin racemase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CTP2_9RHIZ
Asp/Glu/hydantoin racemase
Asp/Glu/hydantoin racemase {ECO:0000313|EMBL:AIQ89230.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobact
scnpilot_p_inoc_scaffold_1823_6
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4977..5681)
DNA (705bp) protein (235aa)
Transcriptional regulator, GntR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12G33_POLSJ rbh
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABE42509.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaro
scnpilot_p_inoc_scaffold_1823_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5821..6543)
DNA (723bp) protein (241aa)
Asp/Glu/hydantoin racemase family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X4J6_VARPD rbh
Asp/Glu/hydantoin racemase family protein
Asp/Glu/hydantoin racemase family protein {ECO:0000313|EMBL:AGU47254.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
scnpilot_p_inoc_scaffold_1823_8
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6768..8180
DNA (1413bp) protein (471aa)
phenylhydantoinase (EC:3.5.2.2)
Dihydropyrimidinase {ECO:0000313|EMBL:ABE42511.1}; EC=3.5.2.2 {ECO:0000313|EMBL:ABE42511.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polar
Dihydropyrimidinase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12G31_POLSJ rbh
scnpilot_p_inoc_scaffold_1823_9
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8219..9280
DNA (1062bp) protein (354aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000374D018 rbh
dctP2; TRAP dicarboxylate transporter, substrate-binding protein DctP
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_p_inoc_scaffold_1823_10
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9336..9956
DNA (621bp) protein (207aa)
TRAP dicarboxylate transporter, permease protein DctQ n=1 Tax=Variovorax paradoxus B4 RepID=T1X509_VARPD
dctQ1; TRAP dicarboxylate transporter, permease protein DctQ
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_p_inoc_scaffold_1823_11
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9953..11245
DNA (1293bp) protein (431aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00036968F1 rbh
TRAP dicarboxylate transporter subunit DctM
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_p_inoc_scaffold_1823_12
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11242..12666
DNA (1425bp) protein (475aa)
Amidase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12G23_POLSJ rbh
amidase
Amidase {ECO:0000313|EMBL:ABE42519.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC
scnpilot_p_inoc_scaffold_1823_13
Roseobacter litoralis, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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12663..13598
DNA (936bp) protein (312aa)
Putative polysaccharide deacetylase n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZHU6_ROSLO rbh
polysaccharide deacetylase
Putative polysaccharide deacetylase {ECO:0000313|EMBL:AEI93706.1}; TaxID=391595 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseob
scnpilot_p_inoc_scaffold_1823_14
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13601..14371
DNA (771bp) protein (257aa)
hydratase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00037B97AD
hydratase
Putative hydratase {ECO:0000313|EMBL:CAQ71683.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis
scnpilot_p_inoc_scaffold_1823_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15132..16148)
DNA (1017bp) protein (339aa)
Transposase IS116/IS110/IS902 family protein id=1278643 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
transposase IS116/IS110/IS902 family protein; K07486 transposase Tax=GWE1_Burkholderiales_65_30_curated
transposase IS116/IS110/IS902 family protein
Displaying 15 items

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