ggKbase home page

scnpilot_p_inoc_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 342 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_28_1

Not on your lists

comp(2..154)
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CAE0_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:KKK90741.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_p_inoc_scaffold_28_2
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

478..1995
DNA (1518bp) protein (506aa)
hypothetical protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=GWC2_Bacteroidetes_46_850_curated
Putative uncharacterized protein id=4595490 bin=GWC2_Bacteroidetes_46_850 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes rbh
hypothetical protein
scnpilot_p_inoc_scaffold_28_3
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2079..3434
DNA (1356bp) protein (452aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=CG_Paludi_01
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036154E5 rbh
scnpilot_p_inoc_scaffold_28_4
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3557..6016
DNA (2460bp) protein (820aa)
pdhE; PdhE (EC:1.2.4.4) Tax=CG_Paludi_01
dehydrogenase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003784C52 rbh
transketolase central region
scnpilot_p_inoc_scaffold_28_5
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6020..7222
DNA (1203bp) protein (401aa)
hypothetical protein
Putative uncharacterized protein Tax=CG_Paludi_01
Putative uncharacterized protein id=1885497 bin=GWD2_Bacteroidales_45_23 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes rbh
scnpilot_p_inoc_scaffold_28_6
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7232..9190
DNA (1959bp) protein (653aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003618E27 rbh
short-chain dehydrogenase/reductase SDR Tax=CG_Paludi_01
hypothetical protein
scnpilot_p_inoc_scaffold_28_7
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9202..10470
DNA (1269bp) protein (423aa)
adh3; Adh Tax=CG_Paludi_01
alcohol dehydrogenase id=4595501 bin=GWC2_Bacteroidetes_46_850 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes rbh
yggP; putative protein YggP
scnpilot_p_inoc_scaffold_28_8
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10590..12005
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Bacteroides propionicifaciens RepID=UPI0003681474
hypothetical protein Tax=GWB2_Bacteroidetes_41_8_curated
hypothetical protein
scnpilot_p_inoc_scaffold_28_9
Bacteroides sp. CAG:598, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12102..12788
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:598 RepID=R5CEX3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX62281.1}; TaxID=1262743 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bactero
transcriptional regulator
scnpilot_p_inoc_scaffold_28_10
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12814..14046
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003693FD5
twp-component sensor histidine kinase Tax=GWF2_Bacteroidetes_35_48_curated
histidine kinase
scnpilot_p_inoc_scaffold_28_11
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14117..14491
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AL89_PSERE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN46048.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resin
scnpilot_p_inoc_scaffold_28_12
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14587..14901)
DNA (315bp) protein (105aa)
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T337_PALPW
biotin/lipoyl attachment domain-containing protein
Biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:ADQ79131.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source=
scnpilot_p_inoc_scaffold_28_13
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14949..16493)
DNA (1545bp) protein (515aa)
carboxyl transferase (EC:6.4.1.3)
Carboxyl transferase {ECO:0000313|EMBL:ADQ79132.1}; EC=6.4.1.3 {ECO:0000313|EMBL:ADQ79132.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibact
Carboxyl transferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T338_PALPW rbh
scnpilot_p_inoc_scaffold_28_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16592..17110)
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T339_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79133.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigen
scnpilot_p_inoc_scaffold_28_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17107..18471)
DNA (1365bp) protein (455aa)
Lytic transglycosylase catalytic n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Q3_PALPW rbh
lytic transglycosylase
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ADQ79347.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter prop
scnpilot_p_inoc_scaffold_28_16
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(18593..20383)
DNA (1791bp) protein (597aa)
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=694427 species="Bacteria; Bact
Arginine--tRNA ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7D0_PALPW rbh
scnpilot_p_inoc_scaffold_28_17
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20631..21206)
DNA (576bp) protein (192aa)
Electron transport complex, RnfABCDGE type, A subunit n=2 Tax=Bacteroides RepID=B3CEJ5_9BACE rbh
electron transport complex protein RnfA; K03617 electron transport complex protein RnfA Tax=CG_Paludi_01
electron transport complex, RnfABCDGE type, A subunit
scnpilot_p_inoc_scaffold_28_18
Bacteroides intestinalis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21211..21804)
DNA (594bp) protein (198aa)
Electron transport complex, RnfABCDGE type, E subunit n=2 Tax=Bacteroides RepID=B3CEJ6_9BACE rbh
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=471870 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides in
electron transport complex, RnfABCDGE type, E subunit
scnpilot_p_inoc_scaffold_28_19
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21818..22447)
DNA (630bp) protein (210aa)
Electron transport complex rnfabcdge type G subunit n=1 Tax=Bacteroides sp. CAG:98 RepID=R7NSI0_9BACE
electron transport complex protein RnfG; K03612 electron transport complex protein RnfG Tax=CG_Paludi_01
electron transport complex, RnfABCDGE type, G subunit
scnpilot_p_inoc_scaffold_28_20
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22457..23425)
DNA (969bp) protein (323aa)
Electron transport complex, RnfABCDGE type, D subunit n=3 Tax=Parabacteroides merdae RepID=A7AKV3_9PORP rbh
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parab
Na+-transporting NADH:ubiquinone oxidoreductase electron transport complex protein RnfD
scnpilot_p_inoc_scaffold_28_21
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23435..24766)
DNA (1332bp) protein (444aa)
Electron transport complex protein RnfC n=5 Tax=Bacteroidales RepID=A6L9C7_PARD8 rbh
electron transport complex protein RnfC; K03615 electron transport complex protein RnfC Tax=CG_Paludi_01
electron transport complex protein RnfC
scnpilot_p_inoc_scaffold_28_22
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24830..25723)
DNA (894bp) protein (298aa)
rnfB; RnfABCDGE type electron transport complex subunit B Tax=CG_Paludi_01
Electron transport complex, RnfABCDGE type, B subunit id=1847017 bin=GWD2_Bacteroidales_45_23 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes rbh
rnfB; RnfABCDGE type electron transport complex subunit B
scnpilot_p_inoc_scaffold_28_23
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25713..26135)
DNA (423bp) protein (141aa)
Positive regulator of sigma(E), RseC/MucC n=1 Tax=Bacteroides ovatus ATCC 8483 RepID=A7LWN0_BACOV
positive regulator of sigma(E), RseC/MucC Tax=CG_Paludi_01
positive regulator of sigma(E), RseC/MucC
scnpilot_p_inoc_scaffold_28_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26316..27587)
DNA (1272bp) protein (424aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Seryl-tRNA synthetase {ECO:0000313|EMBL:ADQ79427.1}; EC=6.1.1.11 {ECO:0000313|EMBL:ADQ79427.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludiba
Seryl-tRNA synthetase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Y3_PALPW rbh
scnpilot_p_inoc_scaffold_28_25
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(27697..27963)
DNA (267bp) protein (89aa)
50S ribosomal protein L27 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Y4_PALPW
50S ribosomal protein L25
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propion
scnpilot_p_inoc_scaffold_28_26
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(27991..28305)
DNA (315bp) protein (105aa)
50S ribosomal protein L21 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Y5_PALPW
50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.
scnpilot_p_inoc_scaffold_28_27
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

comp(28501..30099)
DNA (1599bp) protein (533aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G1G3_9SPHI rbh
mechanosensitive ion channel protein MscS
Tax=BJP_IG2103_Bacteroidetes_41_9
scnpilot_p_inoc_scaffold_28_28
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30163..30888)
DNA (726bp) protein (242aa)
tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; TaxID=694427 species="B
Tryptophan synthase alpha chain n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8I1_PALPW rbh
scnpilot_p_inoc_scaffold_28_29
Coprobacter fastidiosus, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30957..31574)
DNA (618bp) protein (206aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_0013
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Coprobacter fastidiosus NSB1 RepID=U5CB08_9PORP
scnpilot_p_inoc_scaffold_28_30
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31592..32371)
DNA (780bp) protein (260aa)
indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:
Indole-3-glycerol phosphate synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8H9_PALPW rbh
Displaying items 1-30 of 342 in total

View Taxonomy