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scnpilot_p_inoc_scaffold_3652

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_3652_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..262)
DNA (261bp) protein (87aa)
Death-on-curing family protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2PA65_9SPHN
Death-on-curing family protein {ECO:0000313|EMBL:EJL24037.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novo
doc; death-on-curing protein
scnpilot_p_inoc_scaffold_3652_2
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(263..520)
DNA (258bp) protein (86aa)
transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B36CC3
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
scnpilot_p_inoc_scaffold_3652_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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626..1585
DNA (960bp) protein (320aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomon
Pseudouridine synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3R7_9SPHN rbh
pseudouridine synthase
scnpilot_p_inoc_scaffold_3652_4
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1713..2639
DNA (927bp) protein (309aa)
RNA polymerase sigma factor RpoH n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLV0_9SPHN rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacter
RNA polymerase factor sigma-32
scnpilot_p_inoc_scaffold_3652_5
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2716..3042)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI000360E3ED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ70314.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wi
scnpilot_p_inoc_scaffold_3652_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3198..3869
DNA (672bp) protein (224aa)
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL93_9SPHN rbh
Penicillin-binding protein 1F {ECO:0000313|EMBL:AKH42506.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="A
peptidoglycan transglycosylase rbh
scnpilot_p_inoc_scaffold_3652_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3875..4819
DNA (945bp) protein (315aa)
Putative CDF-family cation efflux system protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVJ9_9SPHN rbh
Cadmium, cobalt and zinc/H(+)-K(+) antiporter {ECO:0000313|EMBL:AKH42505.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobac
cation efflux system protein
scnpilot_p_inoc_scaffold_3652_8
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4816..5304
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WUC8_9SPHN
glutathione-dependent formaldehyde-activating protein Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
aldehyde-activating protein
scnpilot_p_inoc_scaffold_3652_9
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5381..6142
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F096_9RHIZ rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EHS53889.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agr
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase
scnpilot_p_inoc_scaffold_3652_10
unknown

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comp(6146..6391)
DNA (246bp) protein (82aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_3652_11
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6392..7660)
DNA (1269bp) protein (423aa)
ATP-dependent protease n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003667D40 rbh
clpX; ATP-dependent protease ATP-binding subunit ClpX
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_3652_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7854..8558)
DNA (705bp) protein (235aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y848_9SPHN rbh
clpP; ATP-dependent Clp protease proteolytic subunit
scnpilot_p_inoc_scaffold_3652_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8810..9616
DNA (807bp) protein (269aa)
Uncharacterized protein {ECO:0000313|EMBL:AKH42934.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter
scnpilot_p_inoc_scaffold_3652_14
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9731..10783)
DNA (1053bp) protein (351aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
Trigger factor n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMU1_9SPHN
trigger factor
Displaying 14 items

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