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SCNpilot_expt_300_bf_scaffold_531

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_531_1
unknown

Not on your lists

452..619
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_531_2
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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609..1055
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G7B3_HERAR
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
hypothetical protein
SCNpilot_expt_300_bf_scaffold_531_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1021..1836)
DNA (816bp) protein (272aa)
[sulfur carrier protein ThiS] adenylyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YA00_NITMU rbh
Molybdopterin biosynthesis protein MoeB {ECO:0000313|EMBL:KIO48954.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="N
UBA/THIF-type NAD/FAD binding domain-containing protein
SCNpilot_expt_300_bf_scaffold_531_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1925..3373)
DNA (1449bp) protein (483aa)
Carboxyl-terminal protease {ECO:0000313|EMBL:CCU63125.1}; EC=3.4.21.102 {ECO:0000313|EMBL:CCU63125.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomo
carboxyl-terminal protease (EC:3.4.21.102)
Carboxyl-terminal protease n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUT4_9PROT rbh
SCNpilot_expt_300_bf_scaffold_531_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3409..4710)
DNA (1302bp) protein (434aa)
Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIF1_9PROT rbh
Peptidase M23 {ECO:0000313|EMBL:KIO48993.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptidase M23B
SCNpilot_expt_300_bf_scaffold_531_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4856..5605)
DNA (750bp) protein (250aa)
gpmA; phosphoglyceromutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK17_9PROT rbh
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO
SCNpilot_expt_300_bf_scaffold_531_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5912..6334
DNA (423bp) protein (141aa)
FIG136845: Rhodanese-related sulfurtransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJY6_9PROT
Membrane protein {ECO:0000313|EMBL:KIO48951.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
rhodanese-like protein
SCNpilot_expt_300_bf_scaffold_531_8
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6343..6597
DNA (255bp) protein (85aa)
Glutaredoxin, GrxC n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9Z5_NITMU
glutaredoxin GrxC
Glutaredoxin, GrxC {ECO:0000313|EMBL:ABB74426.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multifor
SCNpilot_expt_300_bf_scaffold_531_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6834..7316
DNA (483bp) protein (161aa)
Protein-export protein SecB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIF7_9PROT
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
preprotein translocase subunit SecB
SCNpilot_expt_300_bf_scaffold_531_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7329..7826
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK22_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48949.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
SCNpilot_expt_300_bf_scaffold_531_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7823..8824
DNA (1002bp) protein (334aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKM9_9PROT rbh
SCNpilot_expt_300_bf_scaffold_531_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8875..9339)
DNA (465bp) protein (155aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-R
yibK; RNA methyltransferase TrmH, group 2 (EC:2.1.1.-)
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJZ1_9PROT
SCNpilot_expt_300_bf_scaffold_531_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9457..9864)
DNA (408bp) protein (136aa)
Competence protein F homolog,phosphoribosyltransferase domain protein YhgH required for utilization of DNA as sole source of carbon and energy n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUU6_9PROT
Competence protein F homolog,phosphoribosyltransferase domain protein YhgH required for utilization of DNA as sole source of carbon and energy {ECO:0000313|EMBL:CCU63135.1}; TaxID=1288494 species="Bac
phosphoribosyltransferase
SCNpilot_expt_300_bf_scaffold_531_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10379..11368
DNA (990bp) protein (330aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=58133 species="Bacteria; Proteobac
biotin synthase (EC:2.8.1.6)
Biotin synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIG2_9PROT
SCNpilot_expt_300_bf_scaffold_531_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11468..12637
DNA (1170bp) protein (390aa)
8-amino-7-oxononanoate synthase {ECO:0000256|HAMAP-Rule:MF_01693, ECO:0000256|SAAS:SAAS00087543}; Short=AONS {ECO:0000256|HAMAP-Rule:MF_01693};; EC=2.3.1.47 {ECO:0000256|HAMAP-Rule:MF_01693, ECO:00002
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK26_9PROT
SCNpilot_expt_300_bf_scaffold_531_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12647..13438
DNA (792bp) protein (264aa)
Pimeloyl-[acyl-carrier protein] methyl ester esterase {ECO:0000256|HAMAP-Rule:MF_01260, ECO:0000256|SAAS:SAAS00064125}; EC=3.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01260, ECO:0000256|SAAS:SAAS00064111};; B
Pimelyl-[acyl-carrier protein] methyl ester esterase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN5_9PROT rbh
Carboxylesterase bioH
SCNpilot_expt_300_bf_scaffold_531_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13450..14313
DNA (864bp) protein (288aa)
Malonyl-[acyl-carrier protein] O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835, ECO:0000256|SAAS:SAAS00055581}; Short=Malonyl-ACP O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835};; EC=2.1.1.
Malonyl-[acyl-carrier protein] O-methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJZ5_9PROT rbh
biotin biosynthesis protein BioC
SCNpilot_expt_300_bf_scaffold_531_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14319..15008
DNA (690bp) protein (230aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336, ECO:0000256|SAAS:SAAS00089806};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00
bioD; dithiobiotin synthetase (EC:6.3.3.3)
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=BIOD_NITMU
SCNpilot_expt_300_bf_scaffold_531_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15062..15451)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIG7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63141.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
membrane protein
SCNpilot_expt_300_bf_scaffold_531_20
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16139..17119
DNA (981bp) protein (327aa)
Response regulator receiver modulated diguanylate cyclase id=1905927 bin=GWD2_Desulfuromonadales_54_10 species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
diguanylate cyclase Tax=GWD2_Desulfuromonadales_54_10_curated
diguanylate cyclase
SCNpilot_expt_300_bf_scaffold_531_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17506..19593
DNA (2088bp) protein (696aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN8_9PROT rbh
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CCU63143.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
sensory box protein
SCNpilot_expt_300_bf_scaffold_531_22
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19749..20522
DNA (774bp) protein (258aa)
Beta-lactamase-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X9_NITMU rbh
beta-lactamase-like protein
Beta-lactamase-like protein {ECO:0000313|EMBL:ABB74442.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira
SCNpilot_expt_300_bf_scaffold_531_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21021..21302)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIH2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63146.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
SCNpilot_expt_300_bf_scaffold_531_24
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21456..21656)
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO48936.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
SCNpilot_expt_300_bf_scaffold_531_25
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21856..22080)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X6_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74445.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
SCNpilot_expt_300_bf_scaffold_531_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22348..23463)
DNA (1116bp) protein (372aa)
Putative cytoplasmic protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUW5_9PROT rbh
Putative cytoplasmic protein {ECO:0000313|EMBL:CCU63150.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
hypothetical protein
SCNpilot_expt_300_bf_scaffold_531_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23844..25724)
DNA (1881bp) protein (627aa)
DNA mismatch repair protein MutL n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X4_NITMU rbh
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadacea
DNA mismatch repair protein MutL
SCNpilot_expt_300_bf_scaffold_531_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25950..26876)
DNA (927bp) protein (309aa)
Cys regulon transcriptional activator CysB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK41_9PROT rbh
CysB family transcriptional regulator {ECO:0000313|EMBL:KIO48932.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nit
transcriptional regulator CysB-like protein
SCNpilot_expt_300_bf_scaffold_531_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27062..29155
DNA (2094bp) protein (698aa)
Ferredoxin--sulfite reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKP7_9PROT rbh
Nitrite reductase {ECO:0000313|EMBL:KIO48931.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;
nitrite and sulfite reductase 4Fe-4S region
SCNpilot_expt_300_bf_scaffold_531_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29204..30037
DNA (834bp) protein (278aa)
Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin] {ECO:0000313|EMBL:CCU63154.1}; EC=1.8.4.10 {ECO:0000313|EMBL:CCU63154.1};; EC=1.8.4.8 {ECO:0000313|EMBL:CCU63
phosphoadenosine phosphosulfate reductase (EC:1.8.4.8)
Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK09_9PROT rbh
Displaying items 1-30 of 49 in total

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