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SCNpilot_cont_300_bf_scaffold_1193

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1193_1
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(384..1697)
DNA (1314bp) protein (438aa)
ABC transporter related n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V2X6_SPHWW
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABQ66642.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wi
SCNpilot_cont_300_bf_scaffold_1193_2
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1715..3463)
DNA (1749bp) protein (583aa)
sulfonate ABC transporter permease n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB957
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABQ66641.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
SCNpilot_cont_300_bf_scaffold_1193_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4113..5087
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030BE34A
phosphatase
Phosphatase {ECO:0000313|EMBL:AIT07289.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_1193_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5332..7188)
DNA (1857bp) protein (619aa)
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadal
Ribonucleoside-diphosphate reductase n=1 Tax=Sphingomonas sp. S17 RepID=F3WTL9_9SPHN
SCNpilot_cont_300_bf_scaffold_1193_5
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7708..10359)
DNA (2652bp) protein (884aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003781313 rbh
Sensory box protein {ECO:0000313|EMBL:EZP55551.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. R
diguanylate cyclase rbh
SCNpilot_cont_300_bf_scaffold_1193_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10590..12770
DNA (2181bp) protein (727aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1549858 species="Bacteria; Proteobacteria; Alp
ribonuclease R n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B412E9 rbh
ribonuclease R rbh
SCNpilot_cont_300_bf_scaffold_1193_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12772..13080
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037E0C2E
Uncharacterized protein {ECO:0000313|EMBL:AJP70948.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
SCNpilot_cont_300_bf_scaffold_1193_8
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13112..14275)
DNA (1164bp) protein (388aa)
saccharopine dehydrogenase n=1 Tax=Sphingomonas melonis RepID=UPI00037AB458
Saccharopine dehydrogenase {ECO:0000313|EMBL:KHA64452.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
saccharopine dehydrogenase rbh
SCNpilot_cont_300_bf_scaffold_1193_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14332..15567)
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036359D5
ABC transporter
ABC transporter {ECO:0000313|EMBL:AIT06162.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_1193_10
unknown

Not on your lists

15635..16384
DNA (750bp) protein (250aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1193_11
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16450..17619
DNA (1170bp) protein (390aa)
polyhydroxyalkanoate depolymerase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD1C1
Putative polyhydroxyalkanoate depolymerase {ECO:0000313|EMBL:GAM00224.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sou
esterase
SCNpilot_cont_300_bf_scaffold_1193_12
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17951..19159
DNA (1209bp) protein (403aa)
megL; methionine gamma-lyase (EC:4.4.1.11); K01761 methionine-gamma-lyase [EC:4.4.1.11] Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
methionine gamma-lyase (EC:4.4.1.11)
methionine gamma-lyase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B5DBC7 rbh
SCNpilot_cont_300_bf_scaffold_1193_13
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19209..19664
DNA (456bp) protein (152aa)
AsnC family transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VVR2_9RHIZ
AsnC family transcriptional regulator {ECO:0000313|EMBL:EJZ22836.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhi
AsnC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1193_14
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19792..20553)
DNA (762bp) protein (254aa)
ABC-2 type transporter family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WTS9_9SPHN
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1193_15
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20550..21482)
DNA (933bp) protein (311aa)
multidrug ABC transporter ATP-binding protein n=1 Tax=Sphingomonas melonis RepID=UPI0003622A6B
ABC transporter family protein {ECO:0000313|EMBL:EZP55331.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
multidrug ABC transporter ATP-binding protein rbh
SCNpilot_cont_300_bf_scaffold_1193_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21479..22201)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036F3742 rbh
DSBA oxidoreductase
DSBA oxidoreductase {ECO:0000313|EMBL:AIT06170.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.
SCNpilot_cont_300_bf_scaffold_1193_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22198..22305)
DNA (108bp) protein (36aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000376D661
peptidase M48
Sphingomonas taxi strain 30a NODE_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29073.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
SCNpilot_cont_300_bf_scaffold_1193_18
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22248..23477)
DNA (1230bp) protein (410aa)
Peptidase M48 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WTS6_9SPHN
Peptidase M48 {ECO:0000313|EMBL:KHA64385.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
peptidase M48
SCNpilot_cont_300_bf_scaffold_1193_19
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23722..26292)
DNA (2571bp) protein (857aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1219050 species="Bacteria; Proteobacteria; Al
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035D2F43 rbh
ribonuclease
SCNpilot_cont_300_bf_scaffold_1193_20
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26753..27976
DNA (1224bp) protein (408aa)
cell wall hydrolase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037038A8 rbh
N-acetylmuramoyl-L-alanine amidase family protein {ECO:0000313|EMBL:EZP55371.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas
N-acetylmuramoyl-L-alanine amidase
SCNpilot_cont_300_bf_scaffold_1193_21
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28024..30540
DNA (2517bp) protein (839aa)
penicillin-binding protein n=1 Tax=Sphingomonas melonis RepID=UPI0003770267 rbh
Transglycosylase family protein {ECO:0000313|EMBL:EZP55339.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphing
penicillin-binding protein rbh
SCNpilot_cont_300_bf_scaffold_1193_22
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30664..31791
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037AB835 rbh
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphapr
peptide chain release factor 2
SCNpilot_cont_300_bf_scaffold_1193_23
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31788..32585
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003690D9B rbh
Methyltransferase domain protein {ECO:0000313|EMBL:EZP55337.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphin
ubiquinone biosynthesis methyltransferase UbiE
SCNpilot_cont_300_bf_scaffold_1193_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32508..32870)
DNA (363bp) protein (121aa)
DNA repair protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631A3F
DNA, contig: SP617 {ECO:0000313|EMBL:GAN13350.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
DNA repair protein
SCNpilot_cont_300_bf_scaffold_1193_25
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32987..33913
DNA (927bp) protein (309aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:000
Thymidylate synthase (EC:2.1.1.45)
thymidylate synthase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003760DD5 rbh
SCNpilot_cont_300_bf_scaffold_1193_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33938..34276)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000364F6CB
Sphingomonas taxi strain 30a NODE_17, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29968.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1193_27
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34836..36914
DNA (2079bp) protein (693aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=1114964 species="Bacteria; Prote
malate synthase G (EC:2.3.3.9)
Malate synthase G n=1 Tax=Sphingobium baderi LL03 RepID=T0G1S8_9SPHN rbh
SCNpilot_cont_300_bf_scaffold_1193_28
unknown

Not on your lists

37146..37271
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1193_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37288..37761
DNA (474bp) protein (158aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomon
dihydrofolate reductase n=1 Tax=Sphingomonas melonis RepID=UPI000371911B
diacylglycerol kinase
SCNpilot_cont_300_bf_scaffold_1193_30
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38206..39402)
DNA (1197bp) protein (399aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IHA1_9SPHN
DNA-directed RNA polymerase subunit beta'
Displaying 30 items

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