ggKbase home page

SCNpilot_solid_2_scaffold_247

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_2_scaffold_247_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108..2342)
DNA (2235bp) protein (745aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NU88_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS33882.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
hypothetical protein
SCNpilot_solid_2_scaffold_247_2
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2595..2735)
DNA (141bp) protein (47aa)
Magnesium chelatase ChlI subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1L0_9BRAD
Mg chelatase-like protein; K07391 magnesium chelatase family protein
Magnesium chelatase ChlI subunit {ECO:0000313|EMBL:EFI53590.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.
SCNpilot_solid_2_scaffold_247_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2839..3657)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1L1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI53591.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein rbh
SCNpilot_solid_2_scaffold_247_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3774..4715)
DNA (942bp) protein (314aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:
gshB; glutathione synthase GshB (EC:6.3.2.3); K01920 glutathione synthase [EC:6.3.2.3] rbh
Glutathione synthetase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NVF0_AFIFE rbh
SCNpilot_solid_2_scaffold_247_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4746..5141)
DNA (396bp) protein (132aa)
UPF0102 protein HMPREF9697_02710 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIH4_AFIFE
UPF0102 protein HMPREF9697_02710 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis
putative endonuclease; K07460 putative endonuclease
SCNpilot_solid_2_scaffold_247_6
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5138..6205)
DNA (1068bp) protein (356aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule
rsmI; ribosomal RNA small subunit methyltransferase I (EC:2.1.1.-); K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] rbh
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1L4_9BRAD rbh
SCNpilot_solid_2_scaffold_247_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6281..7489
DNA (1209bp) protein (403aa)
Extracellular ligand-binding receptor n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1L5_9BRAD rbh
Putative lipoprotein {ECO:0000313|EMBL:CEG10032.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disea
putative extracellular ligand-binding receptor rbh
SCNpilot_solid_2_scaffold_247_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8409..9566)
DNA (1158bp) protein (386aa)
coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1L6_9BRAD rbh
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EFI53596.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="
SCNpilot_solid_2_scaffold_247_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9556..10194)
DNA (639bp) protein (213aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard p
rdgB; deoxyribonucleotide triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] rbh
Non-canonical purine NTP pyrophosphatase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1L7_9BRAD rbh
SCNpilot_solid_2_scaffold_247_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10311..11027)
DNA (717bp) protein (239aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] rbh
Ribonuclease PH n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIG9_AFIFE rbh
SCNpilot_solid_2_scaffold_247_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11291..12382
DNA (1092bp) protein (364aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1L9_9BRAD rbh
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhi
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor rbh
SCNpilot_solid_2_scaffold_247_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12471..13070
DNA (600bp) protein (200aa)
Protein GrpE n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRR8_AFIFE rbh
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; R
GrpE protein HSP-70 cofactor; K03687 molecular chaperone GrpE rbh
SCNpilot_solid_2_scaffold_247_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13087..14052)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1M1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG10025.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein rbh
SCNpilot_solid_2_scaffold_247_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14350..16263
DNA (1914bp) protein (638aa)
dnaK; chaperone protein DnaK (EC:1.3.1.74); K04043 molecular chaperone DnaK rbh
Chaperone protein DnaK n=1 Tax=Afipia felis ATCC 53690 RepID=K8NVD5_AFIFE rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP
SCNpilot_solid_2_scaffold_247_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16363..17493
DNA (1131bp) protein (377aa)
Chaperone protein DnaJ n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1M3_9BRAD rbh
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" so
dnaJ1; chaperone protein DnaJ; K03686 molecular chaperone DnaJ rbh
SCNpilot_solid_2_scaffold_247_16
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17591..18187
DNA (597bp) protein (199aa)
Ribosomal RNA adenine methylase transferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1M4_9BRAD rbh
Ribosomal RNA adenine methylase transferase {ECO:0000313|EMBL:EFI53604.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia
ribosomal RNA adenine methylase transferase rbh
SCNpilot_solid_2_scaffold_247_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18248..18820
DNA (573bp) protein (191aa)
NADPH-dependent FMN reductase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1M5_9BRAD rbh
FMN-dependent NADPH-azoreductase {ECO:0000313|EMBL:CEG10021.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat s
NADPH-dependent fmn reductase
SCNpilot_solid_2_scaffold_247_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18830..19537
DNA (708bp) protein (236aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase
pyrF; orotidine 5'-phosphate decarboxylase PyrF (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] rbh
Orotidine 5'-phosphate decarboxylase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1M6_9BRAD rbh
SCNpilot_solid_2_scaffold_247_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19610..20422
DNA (813bp) protein (271aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
dapB; dihydrodipicolinate reductase DapB (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] rbh
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1M7_9BRAD rbh
SCNpilot_solid_2_scaffold_247_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20731..21354
DNA (624bp) protein (208aa)
gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase GpmA (EC:5.4.2.1) rbh
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1M8_9BRAD rbh
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO
SCNpilot_solid_2_scaffold_247_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21526..22458)
DNA (933bp) protein (311aa)
ada; regulatory protein Ada (EC:2.1.1.63); K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] rbh
Methylated-DNA-[protein]-cysteine S-methyltransferase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NM20_AFIFE rbh
Methylated-DNA-[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:EKS30166.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sour
SCNpilot_solid_2_scaffold_247_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22512..23030)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1N0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI53610.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_solid_2_scaffold_247_23
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23054..23905
DNA (852bp) protein (284aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=666684 species="
nth; endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] rbh
Endonuclease III n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1N1_9BRAD rbh
SCNpilot_solid_2_scaffold_247_24
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23909..24667)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1N2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI53612.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
CysZ-like protein; K06203 CysZ protein rbh
SCNpilot_solid_2_scaffold_247_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24784..25812)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1N3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG10014.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein rbh
SCNpilot_solid_2_scaffold_247_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25899..27344
DNA (1446bp) protein (482aa)
Amine oxidase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1N4_9BRAD rbh
Putrescine oxidase {ECO:0000313|EMBL:CEG10013.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease
putative amine oxidase rbh
SCNpilot_solid_2_scaffold_247_27
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27534..28505)
DNA (972bp) protein (324aa)
Putative LysR family transcriptional regulator n=1 Tax=Pseudomonas sp. CFII64 RepID=S6GXE3_9PSED
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:CDG85794.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janth
LysR family transcriptional regulator
SCNpilot_solid_2_scaffold_247_28
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28656..29045
DNA (390bp) protein (130aa)
Acyloate catabolism-like protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LDE3_BURGS
acyloate catabolism-like protein
Tautomerase enzyme family protein {ECO:0000313|EMBL:KGC10476.1}; TaxID=13373 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.
SCNpilot_solid_2_scaffold_247_29
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29130..29990
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY251 RepID=UPI000365FAC1 rbh
Fumarylacetoacetate (FAA) hydrolase family protein {ECO:0000313|EMBL:CDG85796.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacter
hypothetical protein
SCNpilot_solid_2_scaffold_247_30
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30054..31235
DNA (1182bp) protein (394aa)
L-lactate dehydrogenase {ECO:0000313|EMBL:EYD74514.1}; EC=1.1.2.3 {ECO:0000313|EMBL:EYD74514.1};; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae
L-lactate dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
L-lactate dehydrogenase n=1 Tax=Rhizobium loti RepID=UPI00037243DE
Displaying items 1-30 of 89 in total

View Taxonomy