ggKbase home page

SCNpilot_expt_500_bf_scaffold_88

Search features with annotation key words

Displaying items 1-30 of 138 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_88_1
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..1049
DNA (1047bp) protein (349aa)
Uncharacterized protein (Fragment) n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G453_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI89971.1}; Flags: Fragment;; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
periplasmic protein
SCNpilot_expt_500_bf_scaffold_88_2
unknown

Not on your lists

comp(1388..1546)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_3
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1596..2504
DNA (909bp) protein (303aa)
C1q domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CE45_9FLAO
C1q domain containing protein {ECO:0000313|EMBL:EJL69616.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
SCNpilot_expt_500_bf_scaffold_88_4
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2819..3754
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W3F2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CEJ71616.1}; Flags: Precursor;; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
SCNpilot_expt_500_bf_scaffold_88_5
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3768..4673
DNA (906bp) protein (302aa)
C1q domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CE45_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CEJ71616.1}; Flags: Precursor;; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
SCNpilot_expt_500_bf_scaffold_88_6
unknown

Not on your lists

comp(4743..4892)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_7
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4935..5834
DNA (900bp) protein (300aa)
C1q domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CE45_9FLAO
C1q domain containing protein {ECO:0000313|EMBL:EJL69616.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
SCNpilot_expt_500_bf_scaffold_88_8
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5841..6785
DNA (945bp) protein (315aa)
C1q domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CE45_9FLAO
C1q domain containing protein {ECO:0000313|EMBL:EJL69616.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
SCNpilot_expt_500_bf_scaffold_88_9
Chryseobacterium soli, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6827..7726
DNA (900bp) protein (300aa)
C1q domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CE45_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF10558.1}; TaxID=445961 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium soli.;"
SCNpilot_expt_500_bf_scaffold_88_10
GWF1_Flavobacteria_32_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8951..9715)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00034AD6E8
LytTR family two component system response regulatory protein
Tax=GWF1_Flavobacteria_32_7_curated
SCNpilot_expt_500_bf_scaffold_88_11
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(9805..12840)
DNA (3036bp) protein (1012aa)
Putative periplasmic ligand-binding sensor domain protein id=3532315 bin=GWF2_Bacteroidetes_38_335 species=Microcoleus sp. PCC 7113 genus=Microcoleus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
signal transduction histidine kinase LytS
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_bf_scaffold_88_12
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13110..15014)
DNA (1905bp) protein (635aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B42BF3
histidine kinase
SCNpilot_expt_500_bf_scaffold_88_13
unknown

Not on your lists

comp(15223..15339)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_14
RBG_13_Bacteroidetes_46_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15365..15640
DNA (276bp) protein (92aa)
RNP-1 like RNA-binding protein n=1 Tax=Imtechella halotolerans K1 RepID=I0W5M8_9FLAO
RNP-1 like RNA-binding protein
Tax=RBG_13_Bacteroidetes_46_8_curated
SCNpilot_expt_500_bf_scaffold_88_15
Imtechella halotolerans, Imtechella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15809..16243
DNA (435bp) protein (145aa)
ColD-shock DNA-binding protein family n=1 Tax=Imtechella halotolerans K1 RepID=I0W5N0_9FLAO
ColD-shock DNA-binding protein family {ECO:0000313|EMBL:EID71696.1}; TaxID=946077 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Imtechella.;" source="Imtechella halotolerans K1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_88_16
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16259..16450
DNA (192bp) protein (64aa)
cold-shock protein n=1 Tax=Empedobacter brevis RepID=UPI000371C01A
Cold shock protein {ECO:0000313|EMBL:EIJ38822.1}; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_500_bf_scaffold_88_17
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16509..17567)
DNA (1059bp) protein (353aa)
3-oxoacyl-[acyl-carrier-protein] synthase III; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-(Acyl-carrier-protein) synthase III n=1 Tax=Chryseobacterium sp. CF314 RepID=J2JL20_9FLAO rbh
3-oxoacyl-(Acyl-carrier-protein) synthase III {ECO:0000313|EMBL:EJL68565.1}; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
SCNpilot_expt_500_bf_scaffold_88_18
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17778..18227)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003819EF6
Transcriptional regulator {ECO:0000313|EMBL:KGO88489.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
two-component system-response regulator, receiver domain
SCNpilot_expt_500_bf_scaffold_88_19
unknown

Not on your lists

18286..18393
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_20
unknown

Not on your lists

comp(18474..18752)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_21
unknown

Not on your lists

comp(18736..18969)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_22
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19161..19916
DNA (756bp) protein (252aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FDC2_FLAJ1
Contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25246.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_bf_scaffold_88_23
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20042..20881
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00037AD121
Mechanosensitive ion channel protein MscS {ECO:0000313|EMBL:KGO94096.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
mechanosensitive ion channel MscS; K03442 small conductance mechanosensitive channel
SCNpilot_expt_500_bf_scaffold_88_24
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20903..21562)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00036ECE44
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein
MgtC/SapB transporter {ECO:0000313|EMBL:ADY52549.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_500_bf_scaffold_88_25
unknown

Not on your lists

comp(21559..21810)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_88_26
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21888..22139)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPP5_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU62455.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_88_27
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22340..24517
DNA (2178bp) protein (726aa)
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FDC1_FLAJ1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ06792.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
SCNpilot_expt_500_bf_scaffold_88_28
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24524..24754
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Burkholderia terrae BS001 RepID=I5CWJ4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIN00263.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_88_29
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24886..25482
DNA (597bp) protein (199aa)
Putative outer membrane protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2JUE5_9FLAO
Putative outer membrane protein {ECO:0000313|EMBL:EJL64583.1}; Flags: Precursor;; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_88_30
unknown

Not on your lists

25485..25733
DNA (249bp) protein (83aa)

This feature has no annotations

Displaying items 1-30 of 138 in total

View Taxonomy