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SCNpilot_cont_1000_p_scaffold_591

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_591_1
unknown

Not on your lists

67..678
DNA (612bp) protein (204aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_591_2
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(698..5179)
DNA (4482bp) protein (1494aa)
TrwC relaxase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDCCE
TrwC relaxase
TrwC relaxase {ECO:0000313|EMBL:AEA26538.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_591_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5460..6143)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CK91_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA22314.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_591_4
unknown

Not on your lists

comp(6140..6625)
DNA (486bp) protein (162aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_591_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6692..8773)
DNA (2082bp) protein (694aa)
Type IV secretory pathway VirD4 protein-like protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CK90_PSEUX
type IV secretory pathway VirD4 protein-like protein
Type IV secretory pathway VirD4 protein-like protein {ECO:0000313|EMBL:AEA22313.1}; Flags: Precursor;; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_591_6
Streptomyces clavuligerus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8770..9447)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI000381EBB8
S.clavuligerus linear plasmid pSCL (complete sequence) {ECO:0000313|EMBL:CAA38045.1}; TaxID=1901 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces clavuligerus.;"
SCNpilot_cont_1000_p_scaffold_591_7
unknown

Not on your lists

comp(9444..9779)
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_591_8
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9776..10150)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXH0_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26544.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_591_9
unknown

Not on your lists

comp(10150..10680)
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_591_10
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10931..11155)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXH1_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26545.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_591_11
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11152..11511)
DNA (360bp) protein (120aa)
excisionase n=1 Tax=Amycolatopsis nigrescens RepID=UPI00037F5E3C
DNA-binding protein, excisionase family {ECO:0000313|EMBL:EHY91103.1}; TaxID=882081 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea NA-128.;"
SCNpilot_cont_1000_p_scaffold_591_12
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11657..11983
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Saccharopolyspora erythraea D RepID=T2S2D1_SACER
Uncharacterized protein {ECO:0000313|EMBL:EQD86777.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_591_13
Streptomyces mutabilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12122..13513
DNA (1392bp) protein (464aa)
regulator n=1 Tax=Saccharopolyspora erythraea RepID=UPI0001D30BF6 rbh
Regulatory protein {ECO:0000313|EMBL:KFG72257.1}; TaxID=67332 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mutabilis.;"
regulator rbh
SCNpilot_cont_1000_p_scaffold_591_14
Streptomyces tsukubaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13507..14316)
DNA (810bp) protein (270aa)
aminoglycoside phosphotransferase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFED1D rbh
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:EIF90710.1}; TaxID=1114943 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces tsukubaensis NRRL18488.;"
aminoglycoside phosphotransferase
SCNpilot_cont_1000_p_scaffold_591_15
BJP_08E140C01_Actinomycetales_67_18, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

14863..15972
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. CIP 53.82 RepID=N9MLC0_9GAMM
spoOJ; chromosome partitioning protein; K03497 chromosome partitioning protein, ParB family
Tax=BJP_08E140C01_Actinomycetales_67_18
SCNpilot_cont_1000_p_scaffold_591_16
BJP_08E140C01_Actinomycetales_67_18, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

15969..16868
DNA (900bp) protein (300aa)
Tax=BJP_08E140C01_Actinomycetales_67_18
SCNpilot_cont_1000_p_scaffold_591_17
BJP_08E140C01_Actinomycetales_67_18, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

16865..18226
DNA (1362bp) protein (454aa)
type II R/M system (EC:2.1.1.72); K00571 site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
Type II R/M system id=4864692 bin=GWC2_Chloroflexi_73_18 species=Helicobacter bizzozeronii genus=Helicobacter taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=BJP_08E140C01_Actinomycetales_67_18
SCNpilot_cont_1000_p_scaffold_591_18
unknown

Not on your lists

comp(18270..18605)
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_591_19
Endozoicomonas numazuensis, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18664..20637)
DNA (1974bp) protein (658aa)
Uncharacterized protein n=1 Tax=Oleispira antarctica RB-8 RepID=R4YPI6_OLEAN
Uncharacterized protein {ECO:0000313|EMBL:KEQ17846.1}; TaxID=1137799 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas numazuensis.;"
DNA sulfur modification protein DndD
SCNpilot_cont_1000_p_scaffold_591_20
unknown

Not on your lists

comp(20634..20813)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_591_21
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20900..22951)
DNA (2052bp) protein (684aa)
Type III restriction protein, restriction subunit n=1 Tax=Oleispira antarctica RB-8 RepID=R4YP53_OLEAN rbh
Type III restriction protein, restriction subunit {ECO:0000313|EMBL:CCK76827.1}; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oleispira.;" source="Oleispira antarctica RB-8.;"
type III restriction protein res subunit rbh
SCNpilot_cont_1000_p_scaffold_591_22
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23225..24409)
DNA (1185bp) protein (395aa)
GntR family transcriptional regulator n=1 Tax=Salinispora arenicola RepID=UPI00035F5315
Phage integrase {ECO:0000313|EMBL:EWM67985.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
GntR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_591_23
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24902..26866)
DNA (1965bp) protein (655aa)
acetoacetyl-CoA synthase; K01907 acetoacetyl-CoA synthetase [EC:6.2.1.16] rbh
Acetoacetyl-CoA synthase {ECO:0000313|EMBL:AEA22511.1}; EC=6.2.1.16 {ECO:0000313|EMBL:AEA22511.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Acetoacetyl-CoA synthase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CM24_PSEUX rbh
SCNpilot_cont_1000_p_scaffold_591_24
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26997..27716)
DNA (720bp) protein (240aa)
dienelactone hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45] rbh
Dienelactone hydrolase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CM23_PSEUX rbh
Dienelactone hydrolase {ECO:0000313|EMBL:AEA22510.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_591_25
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27755..28807
DNA (1053bp) protein (351aa)
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] rbh
Putative phenylalanine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01513}; EC=2.6.1.- {ECO:0000256|HAMAP-Rule:MF_01513};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Putative phenylalanine aminotransferase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CM22_PSEUX rbh
SCNpilot_cont_1000_p_scaffold_591_26
Streptomyces lividans, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28828..29595)
DNA (768bp) protein (256aa)
Putative membrane protein n=2 Tax=Streptomyces lividans RepID=S1SQT4_STRLI rbh
Uncharacterized protein {ECO:0000313|EMBL:AIJ17856.1}; TaxID=457428 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lividans TK24.;"
SCF55.35; hypothetical protein; K07090 rbh
SCNpilot_cont_1000_p_scaffold_591_27
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29799..30071)
DNA (273bp) protein (91aa)
transglycosylase n=1 Tax=Amycolatopsis balhimycina RepID=UPI0003617BBA
Transglycosylase {ECO:0000313|EMBL:KJK44465.1}; TaxID=68170 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
transglycosylase associated protein
SCNpilot_cont_1000_p_scaffold_591_28
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30223..30957)
DNA (735bp) protein (245aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CM20_PSEUX
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AEA22507.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_591_29
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31201..32292
DNA (1092bp) protein (364aa)
glycoside hydrolase family protein, partial n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE0E9
Putative uncharacterized protein {ECO:0000313|EMBL:GAB13395.1}; TaxID=1077972 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
glycoside hydrolase protein
SCNpilot_cont_1000_p_scaffold_591_30
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32373..33077)
DNA (705bp) protein (235aa)
Transcriptional regulator, IclR family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJQ6_PSEUX rbh
IclR family transcriptional regulator rbh
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AEA25916.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Displaying items 1-30 of 46 in total

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