ggKbase home page

SCNpilot_cont_1000_p_scaffold_896

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_896_1
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..743)
DNA (741bp) protein (247aa)
ArsR family transcriptional regulator n=1 Tax=Streptomyces sp. TOR3209 RepID=UPI0002F3F21C
Transcriptional regulator {ECO:0000313|EMBL:EFL29670.1}; TaxID=591159 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes DSM 40736.;"
putative transcriptional regulator
SCNpilot_cont_1000_p_scaffold_896_2
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

905..1549
DNA (645bp) protein (215aa)
GTP cyclohydrolase I (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16] rbh
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
GTP cyclohydrolase 1 n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q8D1_STANL rbh
SCNpilot_cont_1000_p_scaffold_896_3
Streptomyces afghaniensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1542..2699
DNA (1158bp) protein (386aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670};; TaxID=1283301 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces afghaniensis 772.;"
transaldolase (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2]
Transaldolase n=1 Tax=Streptomyces afghaniensis 772 RepID=S4N9H7_9ACTO
SCNpilot_cont_1000_p_scaffold_896_4
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2696..3964
DNA (1269bp) protein (423aa)
pyridine nucleotide-disulfide oxidoreductase; K00529 ferredoxin--NAD+ reductase [EC:1.18.1.3] rbh
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AUM3_STRRD rbh
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ACZ84885.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_cont_1000_p_scaffold_896_5
unknown

Not on your lists

comp(4095..4292)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_896_6
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4581..5321
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI0003733B34
SufR family transcriptional regulator
Putative SufR family transcriptional regulator {ECO:0000313|EMBL:BAH48328.1}; TaxID=632772 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
SCNpilot_cont_1000_p_scaffold_896_7
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5318..5767
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3IW90_FRASU
Membrane protein {ECO:0000313|EMBL:ETK31370.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_896_8
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5910..7670
DNA (1761bp) protein (587aa)
cytochrome c oxidase subunit I; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase, subunit I n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CSM4_PSEUX
Cytochrome c oxidase, subunit I {ECO:0000313|EMBL:AEA23734.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_896_9
Mycobacterium neoaurum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7971..9428
DNA (1458bp) protein (486aa)
catalase (EC:1.11.1.6); K03781 catalase [EC:1.11.1.6] rbh
Catalase n=1 Tax=Mycobacterium neoaurum VKM Ac-1815D RepID=V5X9E6_MYCNE rbh
Catalase KatE {ECO:0000313|EMBL:CDQ46397.1}; TaxID=1795 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium neoaurum.;"
SCNpilot_cont_1000_p_scaffold_896_10
Streptomyces sp. HPH0547, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9683..10072)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HPH0547 RepID=S3B582_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPD89342.1}; TaxID=1203592 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HPH0547.;"
SC6D11.22c; hypothetical protein
SCNpilot_cont_1000_p_scaffold_896_11
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10080..10823)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CUK4_PSEUX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEA25394.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_896_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10947..11309
DNA (363bp) protein (121aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CUK5_PSEUX
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein {ECO:0000313|EMBL:AEA25395.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_896_13
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11302..11970
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Amycolatopsis methanolica RepID=UPI000376B00E
Putative transcriptional regulator {ECO:0000313|EMBL:AIJ26161.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
transcriptional regulator
SCNpilot_cont_1000_p_scaffold_896_14
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12141..12608)
DNA (468bp) protein (156aa)
Regulatory protein MarR n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CVW3_PSEUX
regulatory protein MarR
Regulatory protein MarR {ECO:0000313|EMBL:AEA25448.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_896_15
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12846..13685
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI0003664464
Uncharacterized protein {ECO:0000313|EMBL:AHH98816.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_896_16
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13806..14129
DNA (324bp) protein (108aa)
RNA polymerase-binding protein RbpA n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q9H6_STANL
hypothetical protein
RNA polymerase-binding protein RbpA {ECO:0000256|HAMAP-Rule:MF_01483}; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
SCNpilot_cont_1000_p_scaffold_896_17
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14463..14819
DNA (357bp) protein (119aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SBL7_GEOOG
LuxR family transcriptional regulator {ECO:0000313|EMBL:EWT02914.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
Cupin 2 barrel domain-containing protein
SCNpilot_cont_1000_p_scaffold_896_18
unknown

Not on your lists

14816..14986
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_896_19
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15066..16340
DNA (1275bp) protein (425aa)
NADH-quinone oxidoreductase subunit F; K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
NADH-quinone oxidoreductase, F subunit {ECO:0000313|EMBL:AEA27693.1}; EC=1.6.99.5 {ECO:0000313|EMBL:AEA27693.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
NADH-quinone oxidoreductase, F subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CYW8_PSEUX
SCNpilot_cont_1000_p_scaffold_896_20
Saccharomonospora glauca, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17734..18192
DNA (459bp) protein (153aa)
Transcription elongation factor GreA n=1 Tax=Saccharomonospora glauca K62 RepID=I1D635_9PSEU
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=928724 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora glauca K62.;"
transcription elongation factor GreA; K03624 transcription elongation factor GreA
SCNpilot_cont_1000_p_scaffold_896_21
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18368..19180
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D1T6_PSEUX
hypothetical protein; K06204 DnaK suppressor protein
Uncharacterized protein {ECO:0000313|EMBL:AEA27996.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_896_22
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19066..19530)
DNA (465bp) protein (155aa)
Transcriptional regulator, MarR family n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RRW3_BLASD
marR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CCG02957.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
SCNpilot_cont_1000_p_scaffold_896_23
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19644..19922
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D1T4_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA27994.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_896_24
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20008..20973
DNA (966bp) protein (322aa)
Stomatin family protein n=2 Tax=Rhodococcus opacus RepID=C1AS68_RHOOB rbh
stomatin family protein rbh
Stomatin family protein {ECO:0000313|EMBL:EKT78902.1}; TaxID=1129896 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
SCNpilot_cont_1000_p_scaffold_896_25
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20970..21917
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Streptomyces vitaminophilus RepID=UPI000380D90E
Universal stress protein UspA {ECO:0000313|EMBL:AKH82118.1}; TaxID=444103 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_896_26
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22066..23349
DNA (1284bp) protein (428aa)
Transcriptional regulator, CdaR n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D1T7_PSEUX rbh
transcriptional regulator CdaR rbh
Transcriptional regulator, CdaR {ECO:0000313|EMBL:AEA27997.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_896_27
Streptomyces zinciresistens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23748..24167)
DNA (420bp) protein (140aa)
Universal stress protein n=1 Tax=Streptomyces zinciresistens K42 RepID=G2GPT4_9ACTO
Universal stress protein {ECO:0000313|EMBL:EGX54482.1}; TaxID=700597 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces zinciresistens K42.;"
stress-inducible protein
SCNpilot_cont_1000_p_scaffold_896_28
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24209..24346)
DNA (138bp) protein (46aa)
NAD(P) transhydrogenase subunit beta; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2]
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; Flags: Precursor;; TaxID=106370 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI0003741056
SCNpilot_cont_1000_p_scaffold_896_29
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24658..25350)
DNA (693bp) protein (231aa)
ornithine aminotransferase n=1 Tax=Glaciibacter superstes RepID=UPI0003B661C6
Uncharacterized protein {ECO:0000313|EMBL:EWM12133.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
putative osmotically inducible protein Y
SCNpilot_cont_1000_p_scaffold_896_30
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25591..26121
DNA (531bp) protein (177aa)
thermoresistant glucokinase family carbohydrate kinase; K00851 gluconokinase [EC:2.7.1.12]
Carbohydrate kinase, thermoresistant glucokinase family {ECO:0000313|EMBL:ADP83563.1}; EC=2.7.1.12 {ECO:0000313|EMBL:ADP83563.1};; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
Carbohydrate kinase, thermoresistant glucokinase family n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3JDD0_FRASU
Displaying items 1-30 of 38 in total

View Taxonomy