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SCNpilot_cont_1000_p_scaffold_56

Search features with annotation key words

Displaying items 61-90 of 224 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_56_61
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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66857..67942
DNA (1086bp) protein (362aa)
Bacterial peptide chain release factor 2 (BRF-2) n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PV12_CHIPD rbh
peptide chain release factor 2; K02836 peptide chain release factor 2 rbh
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_56_62
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

68045..69727
DNA (1683bp) protein (561aa)
ABC transporter related n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP28_CHIPD
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACU58725.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_56_63
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

69817..71097
DNA (1281bp) protein (427aa)
histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Histidine kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSM2_CHIPD
SCNpilot_cont_1000_p_scaffold_56_64
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(71101..71688)
DNA (588bp) protein (196aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087942}; EC=1.11.1.15 {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087930};; Alkylhydroperoxidase AhpD {ECO:0000256|HAMAP-Rule:MF_01676}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
Alkyl hydroperoxide reductase AhpD n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W316_DYAFD
alkylhydroperoxidase; K04756 alkyl hydroperoxide reductase subunit D
SCNpilot_cont_1000_p_scaffold_56_65
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(71767..72324)
DNA (558bp) protein (186aa)
alkyl hydroperoxide reductase; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
alkyl hydroperoxide reductase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036927A0
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ACT95730.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_1000_p_scaffold_56_66
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(72542..74611)
DNA (2070bp) protein (690aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLT4_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU62148.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_56_67
Bacteroidales bacterium CF, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

74713..76881
DNA (2169bp) protein (723aa)
peptidase S46 n=1 Tax=Thermophagus xiamenensis RepID=UPI000255D61E
hypothetical protein
Peptidase S {ECO:0000313|EMBL:AGY53571.1}; TaxID=1400053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales.;" source="Bacteroidales bacterium CF.;"
SCNpilot_cont_1000_p_scaffold_56_68
unknown

Not on your lists

76949..77434
DNA (486bp) protein (162aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_56_69
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

77440..80034
DNA (2595bp) protein (865aa)
IPT/TIG domain protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZHJ5_9BACT rbh
IPT/TIG domain protein {ECO:0000313|EMBL:EAY30002.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
glycosyl hydrolase rbh
SCNpilot_cont_1000_p_scaffold_56_70
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(80036..81697)
DNA (1662bp) protein (554aa)
DNA repair protein RecN n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ56_CHIPD
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N)
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_56_71
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

81774..82946
DNA (1173bp) protein (391aa)
RNA methylase; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] rbh
Putative RNA methylase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR65_CHIPD rbh
Putative RNA methylase {ECO:0000313|EMBL:ACU64304.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_56_72
unknown

Not on your lists

comp(83058..83597)
DNA (540bp) protein (180aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_56_73
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

83872..87198
DNA (3327bp) protein (1109aa)
Protein translocase subunit SecA n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLJ5_NIAKG
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
protein translocase subunit secA; K03070 preprotein translocase subunit SecA
SCNpilot_cont_1000_p_scaffold_56_74
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

87277..87516
DNA (240bp) protein (80aa)
Putative uncharacterized protein id=2552343 bin=GWC1_Spirochaetes_27_15 species=Rivularia sp. PCC 7116 genus=Rivularia taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
SCNpilot_cont_1000_p_scaffold_56_75
unknown

Not on your lists

87516..87647
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_56_76
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(87857..89206)
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003723515 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHM59925.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_56_77
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

89212..91173
DNA (1962bp) protein (654aa)
asparagine synthase; K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] rbh
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI0003471B4B rbh
Asparagine synthase {ECO:0000313|EMBL:AHM60970.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
SCNpilot_cont_1000_p_scaffold_56_78
GWE2_Spirochaetes_31_10_curated, Spirochaetes, Bacteria

Not on your lists

92349..93512
DNA (1164bp) protein (388aa)
Uncharacterized protein id=1769742 bin=GWE2_Spirochaete_31_10 species=Methanobacterium formicicum genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWE2_Spirochaete_31_10 organism_group=Spirochaetes organism_desc=Good +
hypothetical protein
Tax=GWE2_Spirochaetes_31_10_curated
SCNpilot_cont_1000_p_scaffold_56_79
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

93509..94000
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2R330_METFO
Uncharacterized protein {ECO:0000313|EMBL:EKF86938.1}; TaxID=1204725 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium formicicum DSM 3637.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_56_80
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

94012..95949
DNA (1938bp) protein (646aa)
Uncharacterized protein n=1 Tax=Bacillus mycoides Rock1-4 RepID=C3AXA2_BACMY rbh
hypothetical protein rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
SCNpilot_cont_1000_p_scaffold_56_81
Tamlana sedimentorum, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

95954..96466
DNA (513bp) protein (171aa)
Uncharacterized protein {ECO:0000313|EMBL:KJD36429.1}; TaxID=1435349 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana sedimentorum.;"
SCNpilot_cont_1000_p_scaffold_56_82
unknown

Not on your lists

comp(96471..96587)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_56_83
unknown

Not on your lists

comp(96584..97171)
DNA (588bp) protein (196aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_56_84
RLO_PLX_64_10, Bacteria

Not on your lists

97444..98808
DNA (1365bp) protein (455aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI00035C0B0C
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
SCNpilot_cont_1000_p_scaffold_56_85
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

98891..99652
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI00038067D8
S1/P1 Nuclease
S1/P1 Nuclease {ECO:0000313|EMBL:AGA77692.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
SCNpilot_cont_1000_p_scaffold_56_86
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(99669..100775)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000377000F
ABC transporter; K09686 antibiotic transport system permease protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_cont_1000_p_scaffold_56_87
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(100870..101346)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI000373A843
peptidase S8 and S53 subtilisin kexin sedolisin
Uncharacterized protein {ECO:0000313|EMBL:AEV98765.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_p_scaffold_56_88
unknown

Not on your lists

101420..101551
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_56_89
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

101626..102870
DNA (1245bp) protein (415aa)
Glycosyl transferase group 1 id=3742274 bin=GWF2_Bacteroidetes_35_48 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81 rbh
group 1 glycosyl transferase rbh
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
SCNpilot_cont_1000_p_scaffold_56_90
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(102871..103854)
DNA (984bp) protein (328aa)
UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI00037DDC90 rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:AHJ95676.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
Displaying items 61-90 of 224 in total

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