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SCNpilot_cont_1000_p_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 224 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_56_1
unknown

Not on your lists

comp(1..192)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_56_2
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(293..2401)
DNA (2109bp) protein (703aa)
Fibronectin type III domain protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ID20_FLUTR
Fibronectin type III domain-containing protein
Fibronectin type III domain protein {ECO:0000313|EMBL:AEA44414.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_cont_1000_p_scaffold_56_3
unknown

Not on your lists

2757..3158
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_56_4
Strongylocentrotus purpuratus, Strongylocentrotus, Echinoida, Euechinoidea, Echinodermata, Metazoa

Not on your lists

comp(3302..3799)
DNA (498bp) protein (166aa)
Uncharacterized protein (Fragment) n=1 Tax=Strongylocentrotus purpuratus RepID=H3JGG5_STRPU
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:SPU_025666-tr}; TaxID=7668 species="Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus.;" source="Strongylocentrotus purpuratus (Purple sea urchin).;"
SCNpilot_cont_1000_p_scaffold_56_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4056..5540
DNA (1485bp) protein (495aa)
TPR repeat-containing protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ57_CHIPD
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ACU64295.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_56_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5550..6080)
DNA (531bp) protein (177aa)
Uncharacterized protein family UPF0093 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMG0_NIAKG
hypothetical protein; K08973 putative membrane protein
Uncharacterized protein family UPF0093 {ECO:0000313|EMBL:AEW01948.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_p_scaffold_56_7
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6090..7145)
DNA (1056bp) protein (352aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ferrochelatase; K01772 ferrochelatase [EC:4.99.1.1]
Ferrochelatase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMG1_NIAKG
SCNpilot_cont_1000_p_scaffold_56_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7307..8515
DNA (1209bp) protein (403aa)
glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase [EC:1.2.1.70]
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Glutamyl-tRNA reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMG2_NIAKG
SCNpilot_cont_1000_p_scaffold_56_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8521..9441
DNA (921bp) protein (307aa)
hydroxymethylbilane synthase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61] rbh
Hydroxymethylbilane synthase {ECO:0000256|SAAS:SAAS00018413}; EC=2.5.1.61 {ECO:0000256|SAAS:SAAS00018413};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Hydroxymethylbilane synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMG3_NIAKG rbh
SCNpilot_cont_1000_p_scaffold_56_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9431..10138
DNA (708bp) protein (236aa)
uroporphyrinogen III synthase HEM4; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
Uroporphyrinogen III synthase HEM4 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMG4_NIAKG
Uroporphyrinogen III synthase HEM4 {ECO:0000313|EMBL:AEW01952.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_p_scaffold_56_11
Schleiferia thermophila, Schleiferia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10135..11184
DNA (1050bp) protein (350aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1453500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Schleiferiaceae; Schleiferia.;" source="Schleiferia thermophila str. Yellowstone.;"
uroporphyrinogen decarboxylase; K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000363E4BC rbh
SCNpilot_cont_1000_p_scaffold_56_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11187..12095
DNA (909bp) protein (303aa)
coproporphyrinogen III oxidase; K00228 coproporphyrinogen III oxidase [EC:1.3.3.3] rbh
Coproporphyrinogen oxidase {ECO:0000256|SAAS:SAAS00122066}; EC=1.3.3.3 {ECO:0000256|SAAS:SAAS00122066};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Coproporphyrinogen oxidase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKZ7_CHIPD rbh
SCNpilot_cont_1000_p_scaffold_56_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12118..13086
DNA (969bp) protein (323aa)
porphobilinogen synthase; K01698 porphobilinogen synthase [EC:4.2.1.24] rbh
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Delta-aminolevulinic acid dehydratase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMG7_NIAKG rbh
SCNpilot_cont_1000_p_scaffold_56_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13099..14394
DNA (1296bp) protein (432aa)
glutamate-1-semialdehyde 2,1-aminomutase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] rbh
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMG8_NIAKG rbh
SCNpilot_cont_1000_p_scaffold_56_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(14481..16712)
DNA (2232bp) protein (744aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037160FA rbh
RNA binding S1 domain-containing protein; K06959 uncharacterized protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_cont_1000_p_scaffold_56_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16715..17317
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFJ8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98429.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_p_scaffold_56_17
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

Not on your lists

comp(17318..18754)
DNA (1437bp) protein (479aa)
Alpha/beta superfamily hydrolase n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AGK7_IGNAJ rbh
Alpha/beta superfamily hydrolase; K06889 rbh
Tax=RBG_19FT_COMBO_JS1_35_14_curated
SCNpilot_cont_1000_p_scaffold_56_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(18797..19468)
DNA (672bp) protein (224aa)
membrane protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B58B25
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_cont_1000_p_scaffold_56_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(19487..19744)
DNA (258bp) protein (86aa)
transcriptional regulator, partial n=1 Tax=Cytophagales str. B6 RepID=UPI0003B44E2D
regulatory protein ArsR
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_cont_1000_p_scaffold_56_20
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19842..20867)
DNA (1026bp) protein (342aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855, ECO:0000256|SAAS:SAAS00181223};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
D-fructose 1,6-bisphosphatase; K03841 fructose-1,6-bisphosphatase I [EC:3.1.3.11]
Fructose-1,6-bisphosphatase class 1 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGK5_NIAKG
SCNpilot_cont_1000_p_scaffold_56_21
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

20997..21422
DNA (426bp) protein (142aa)
NUDIX hydrolase n=1 Tax=Thermophagus xiamenensis RepID=UPI000255DACC
ADP-ribose pyrophosphatase
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_cont_1000_p_scaffold_56_22
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21482..23284
DNA (1803bp) protein (601aa)
ABC transporter related n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W473_DYAFD rbh
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial rbh
ABC transporter related {ECO:0000313|EMBL:ACT92310.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_1000_p_scaffold_56_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(23279..24877)
DNA (1599bp) protein (533aa)
L-aspartate oxidase; K00278 L-aspartate oxidase [EC:1.4.3.16]
L-aspartate oxidase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLA4_CHIPD
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_cont_1000_p_scaffold_56_24
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24880..26460)
DNA (1581bp) protein (527aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI00037140E4 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGE88625.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylibacter xiamenensis.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_56_25
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26552..27043
DNA (492bp) protein (164aa)
Thiol-disulfide isomerase-like thioredoxin id=2805240 bin=GWF2_Bacteroidetes_49_14 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
Tax=GWF2_Bacteroidetes_49_14_curated
SCNpilot_cont_1000_p_scaffold_56_26
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27097..28137)
DNA (1041bp) protein (347aa)
UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
UDP-glucose 4-epimerase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PD60_CHIPD
UDP-glucose 4-epimerase {ECO:0000313|EMBL:ACU57683.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_56_27
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(28168..29967)
DNA (1800bp) protein (600aa)
xenobiotic-transporting ATPase; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] rbh
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000365BE23 rbh
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_cont_1000_p_scaffold_56_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29974..31467)
DNA (1494bp) protein (498aa)
cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Cysteine--tRNA ligase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7N7_NIAKG
SCNpilot_cont_1000_p_scaffold_56_29
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31658..32791)
DNA (1134bp) protein (378aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK15_CHIPD
endonuclease/exonuclease/phosphatase
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:ACU58356.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_56_30
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(32799..33692)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000377492C
rhomboid family protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying items 1-30 of 224 in total

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