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SCNpilot_cont_1000_p_scaffold_63

Search features with annotation key words

Displaying items 1-30 of 200 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_63_1
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..1608)
DNA (1608bp) protein (536aa)
Ig family protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SE31_PEDSD rbh
Ig family protein rbh
Ig family protein {ECO:0000313|EMBL:ADY52957.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_cont_1000_p_scaffold_63_2
unknown

Not on your lists

1714..1854
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_3
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2122..3009
DNA (888bp) protein (296aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D1C2_MYXXD
Uncharacterized protein {ECO:0000313|EMBL:AKF79893.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_63_4
unknown

Not on your lists

comp(3127..3921)
DNA (795bp) protein (265aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_5
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4136..4780)
DNA (645bp) protein (215aa)
Two-component response regulator id=1837375 bin=GWE2_Bacteroidetes_42_24 species=unknown genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
two component transcriptional regulator, LuxR family
Tax=GWF2_Bacteroidetes_43_11_curated
SCNpilot_cont_1000_p_scaffold_63_6
unknown

Not on your lists

comp(4929..5756)
DNA (828bp) protein (276aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_7
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5865..9245)
DNA (3381bp) protein (1127aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] rbh
Transcription-repair-coupling factor n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PET5_CHIPD rbh
SCNpilot_cont_1000_p_scaffold_63_8
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9386..10618
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI0003702EE3
Uncharacterized protein {ECO:0000313|EMBL:AHJ99281.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
SCNpilot_cont_1000_p_scaffold_63_9
unknown

Not on your lists

10721..11593
DNA (873bp) protein (291aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_10
unknown

Not on your lists

11653..11928
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_11
Saprospira grandis, Saprospira, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12003..13163)
DNA (1161bp) protein (387aa)
paaH; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] rbh
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B352E2 rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EJF55197.1}; Flags: Precursor;; TaxID=694433 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Saprospira.;" source="Saprospira grandis DSM 2844.;"
SCNpilot_cont_1000_p_scaffold_63_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13167..14174)
DNA (1008bp) protein (336aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PG14_CHIPD rbh
fumarylacetoacetate (FAA) hydrolase rbh
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:ACU57997.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_63_13
unknown

Not on your lists

comp(14266..14784)
DNA (519bp) protein (173aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_14
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14804..15601)
DNA (798bp) protein (266aa)
Arginine-specific cysteine proteinase id=3680895 bin=GWF2_Bacteroidetes_35_48 species=Bacteroidetes oral taxon 274 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
Tax=GWF2_Bacteroidetes_35_48_curated
SCNpilot_cont_1000_p_scaffold_63_15
unknown

Not on your lists

comp(15598..16314)
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_16
unknown

Not on your lists

comp(16378..17121)
DNA (744bp) protein (248aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_17
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17413..23436)
DNA (6024bp) protein (2008aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037A0125 rbh
RHS repeat-associated core domain-containing protein {ECO:0000313|EMBL:KKB55668.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
RHS repeat-associated core domain protein rbh
SCNpilot_cont_1000_p_scaffold_63_18
unknown

Not on your lists

comp(23481..23954)
DNA (474bp) protein (158aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_19
unknown

Not on your lists

comp(24090..24512)
DNA (423bp) protein (141aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_20
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(24629..25651)
DNA (1023bp) protein (341aa)
aromatic amino acid beta-eliminating lyase/threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5]
threonine aldolase n=1 Tax=Anaerophaga thermohalophila RepID=UPI000237C848
Threonine aldolase {ECO:0000313|EMBL:KIF31036.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
SCNpilot_cont_1000_p_scaffold_63_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(25692..26021)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035F9846
chaperone CsaA; K06878 tRNA-binding protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_cont_1000_p_scaffold_63_22
unknown

Not on your lists

26142..26867
DNA (726bp) protein (242aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_23
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

27025..27816
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKH1_NITGG
Putative cell surface uncharacterized protein related to type IV pili {ECO:0000313|EMBL:AIC15154.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_63_24
GWB1_OD1_50_10, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

28036..29397
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKH1_NITGG
Uncharacterized protein {ECO:0000313|EMBL:KKW14683.1}; TaxID=1618665 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWB1_50_10.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_63_25
unknown

Not on your lists

29474..30199
DNA (726bp) protein (242aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_26
unknown

Not on your lists

30206..30928
DNA (723bp) protein (241aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_63_27
Leptospira sp. B5-022, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

31031..32971
DNA (1941bp) protein (647aa)
Adenylate/guanylate cyclase catalytic domain protein n=1 Tax=Leptospira sp. B5-022 RepID=M6D4G6_9LEPT rbh
Adenylate/guanylate cyclase catalytic domain protein {ECO:0000313|EMBL:EMJ97571.1}; TaxID=1242992 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira sp. B5-022.;"
adenylate/guanylate cyclase with GAF sensor(s)
SCNpilot_cont_1000_p_scaffold_63_28
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32975..36748)
DNA (3774bp) protein (1258aa)
PKD domain containing protein id=4518474 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
PKD domain-containing protein
Tax=GWA2_Bacteroidetes_32_17_curated
SCNpilot_cont_1000_p_scaffold_63_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(37049..38857)
DNA (1809bp) protein (603aa)
GTP-binding protein TypA n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGC3_NIAKG
GTP-binding protein TypA; K06207 GTP-binding protein
GTP-binding protein TypA {ECO:0000313|EMBL:AEW02762.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_p_scaffold_63_30
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

39274..39495
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI00037D85AF
Transcriptional regulator {ECO:0000313|EMBL:AIM35462.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
Displaying items 1-30 of 200 in total

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