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SCNpilot_expt_500_bf_scaffold_917

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_917_1
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75..299)
DNA (225bp) protein (75aa)
Integrase catalytic subunit n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C3X9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA09581.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
integrase catalytic subunit
SCNpilot_expt_500_bf_scaffold_917_2
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(360..1835)
DNA (1476bp) protein (492aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CPE2_SPHYA rbh
Transposase IS66 {ECO:0000313|EMBL:AJA09580.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_917_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1867..2223)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CVP8_SPHYA
IS66 Orf2 family protein {ECO:0000313|EMBL:AJA09579.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
IS66 Orf2 family protein; K07484 transposase
SCNpilot_expt_500_bf_scaffold_917_4
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2220..2663)
DNA (444bp) protein (148aa)
transposase IS3 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B67DCC
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:AJA09578.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
transposase IS3/IS911 family protein; K07483 transposase
SCNpilot_expt_500_bf_scaffold_917_5
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2660..3436)
DNA (777bp) protein (259aa)
Integrase, catalytic region n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GS92_SPHAL rbh
Integrase catalytic subunit {ECO:0000313|EMBL:AJA09577.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
integrase catalytic subunit rbh
SCNpilot_expt_500_bf_scaffold_917_6
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3617..4201)
DNA (585bp) protein (195aa)
TetR/AcrR family transcriptional regulator n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C249
TetR/AcrR family transcriptional regulator {ECO:0000313|EMBL:AJA09576.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
TetR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_917_7
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4373..5986)
DNA (1614bp) protein (538aa)
Medium-chain-fatty-acid-CoA ligase {ECO:0000313|EMBL:AJA09575.1}; EC=6.2.1.- {ECO:0000313|EMBL:AJA09575.1};; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
AMP-dependent synthetase and ligase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) PF8_CAUST">RepID=D5VPF8_CAUST rbh
SCNpilot_expt_500_bf_scaffold_917_8
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6201..6614)
DNA (414bp) protein (138aa)
Beta-lactamase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ57_SPHAL
Beta-lactamase {ECO:0000313|EMBL:AJA09574.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
beta-lactamase
SCNpilot_expt_500_bf_scaffold_917_9
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7296..8036
DNA (741bp) protein (247aa)
Transcriptional regulator, GntR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ58_SPHAL
GntR family transcriptional regulator {ECO:0000313|EMBL:AJA09573.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
GntR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_917_10
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8033..9337
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ59_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:AJA09572.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_917_11
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9444..11624
DNA (2181bp) protein (727aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ60_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:KJS26453.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_917_12
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11680..13227
DNA (1548bp) protein (516aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
carboxylesterase type B; K03929 para-nitrobenzyl esterase [EC:3.1.1.-] rbh
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000378B437 rbh
SCNpilot_expt_500_bf_scaffold_917_13
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13289..14521
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ62_SPHAL rbh
Putative secreted protein {ECO:0000313|EMBL:AJA09569.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_917_14
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14807..15217)
DNA (411bp) protein (137aa)
Thioesterase superfamily protein n=2 Tax=Sphingomonas aromaticivorans RepID=A4XDY8_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:AJA09568.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
thioesterase superfamily protein
SCNpilot_expt_500_bf_scaffold_917_15
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15214..16092)
DNA (879bp) protein (293aa)
Alpha/beta hydrolase fold n=2 Tax=Sphingomonas aromaticivorans RepID=A4XDY9_NOVAD rbh
Alpha/beta hydrolase fold {ECO:0000313|EMBL:AJA09567.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
alpha/beta hydrolase fold rbh
SCNpilot_expt_500_bf_scaffold_917_16
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16140..16661
DNA (522bp) protein (174aa)
Transcriptional regulator, TrmB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XDZ0_NOVAD
Transcriptional regulator, TrmB {ECO:0000313|EMBL:AJA09566.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
transcriptional regulator, TrmB
SCNpilot_expt_500_bf_scaffold_917_17
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17191..17520
DNA (330bp) protein (110aa)
Transposase IS3/IS911 family protein n=2 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VGW6_SPHWW
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:AJA09565.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
transposase IS3/IS911 family protein; K07483 transposase
SCNpilot_expt_500_bf_scaffold_917_18
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17697..18239
DNA (543bp) protein (181aa)
Integrase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HH02_9SPHN
ISCc3, transposase OrfB {ECO:0000313|EMBL:AJA09564.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
transposase, orfB
SCNpilot_expt_500_bf_scaffold_917_19
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18332..18658)
DNA (327bp) protein (109aa)
Putative ferredoxin n=1 Tax=Sphingopyxis macrogoltabida RepID=Q5F4D7_SPHMC
Ferredoxin, 2Fe-2S {ECO:0000313|EMBL:AJA09563.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
ferredoxin, 2Fe-2S; K04755 ferredoxin, 2Fe-2S
SCNpilot_expt_500_bf_scaffold_917_20
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18688..19950)
DNA (1263bp) protein (421aa)
Putative cytochrome P450 alkane hydroxylase CYP153A8 n=1 Tax=Sphingopyxis macrogoltabida RepID=Q5F4D6_SPHMC rbh
Cytochrome P450 family protein {ECO:0000313|EMBL:AJA09562.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
cytochrome P450 family protein rbh
SCNpilot_expt_500_bf_scaffold_917_21
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20138..20881
DNA (744bp) protein (248aa)
GntR family transcriptional regulator n=1 Tax=Henriciella marina RepID=UPI00036DA1BE rbh
Regulatory protein GntR, HTH {ECO:0000313|EMBL:AJA09561.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
regulatory protein GntR rbh
SCNpilot_expt_500_bf_scaffold_917_22
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20926..22068
DNA (1143bp) protein (381aa)
Oxidoreductase, 2-nitropropane dioxygenase family protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PDG2_9SPHN rbh
Oxidoreductase, 2-nitropropane dioxygenase family protein {ECO:0000313|EMBL:AJA09560.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
oxidoreductase, 2-nitropropane dioxygenas rbh
SCNpilot_expt_500_bf_scaffold_917_23
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22093..23283
DNA (1191bp) protein (397aa)
Putative nonspecific lipid-transfer protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PDG0_9SPHN rbh
Putative nonspecific lipid-transfer protein {ECO:0000313|EMBL:AJA09559.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
nonspecific lipid-transfer protein rbh
SCNpilot_expt_500_bf_scaffold_917_24
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23280..23741
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Erythrobacter RepID=Q2N5F5_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:AJA09558.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein; K07068
SCNpilot_expt_500_bf_scaffold_917_25
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23749..24969
DNA (1221bp) protein (407aa)
Putative acyl-CoA dehydrogenase family protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N5F4_ERYLH rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AJA09557.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
acyl-CoA dehydrogenase rbh
SCNpilot_expt_500_bf_scaffold_917_26
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24969..26060
DNA (1092bp) protein (364aa)
acyl-CoA dehydrogenase n=1 Tax=Henriciella marina RepID=UPI00036A420D rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AJA09556.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
acyl-CoA dehydrogenase rbh
SCNpilot_expt_500_bf_scaffold_917_27
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26119..27213
DNA (1095bp) protein (365aa)
Acyl-CoA synthetase {ECO:0000313|EMBL:AJA09555.1}; EC=2.3.1.86 {ECO:0000313|EMBL:AJA09555.1};; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
acyl-CoA synthetase (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
acyl-CoA synthetase n=1 Tax=Henriciella marina RepID=UPI00037A0BB5 rbh
Displaying 27 items

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