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SCNpilot_expt_500_bf_scaffold_2543

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2543_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(199..534)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAZ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80923.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2543_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

614..1123
DNA (510bp) protein (170aa)
HxlR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W087_9SPHN rbh
HxlR family transcriptional regulator {ECO:0000313|EMBL:ENY80922.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
HxlR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_2543_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1172..2317
DNA (1146bp) protein (382aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Signal transduction histidine kinase LytS n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBS3_9SPHN rbh
signal transduction histidine kinase LytS rbh
SCNpilot_expt_500_bf_scaffold_2543_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2314..3120
DNA (807bp) protein (269aa)
Response regulator receiver protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UR18_9SPHN rbh
Response regulator receiver protein {ECO:0000313|EMBL:ENY80920.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
response regulator receiver protein; K02477 two-component system, LytT family, response regulator rbh
SCNpilot_expt_500_bf_scaffold_2543_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3229..4239)
DNA (1011bp) protein (337aa)
GTP cyclohydrolase II {ECO:0000256|SAAS:SAAS00129532}; EC=3.5.4.25 {ECO:0000256|SAAS:SAAS00129532};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
GTP cyclohydrolase II; K01497 GTP cyclohydrolase II [EC:3.5.4.25] rbh
GTP cyclohydrolase II n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URF7_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_2543_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4236..5123)
DNA (888bp) protein (296aa)
exodeoxyribonuclease III (xth); K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Exodeoxyribonuclease III n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAZ1_9SPHN rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:ENY80918.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2543_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5418..6074)
DNA (657bp) protein (219aa)
Outer membrane lipoprotein carrier protein LolA n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W083_9SPHN rbh
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
outer membrane lipoprotein carrier protein LolA rbh
SCNpilot_expt_500_bf_scaffold_2543_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6187..8502)
DNA (2316bp) protein (772aa)
Cell division protein FtsK n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBR5_9SPHN rbh
Cell division protein FtsK {ECO:0000313|EMBL:ENY80916.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
cell division protein FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family rbh
SCNpilot_expt_500_bf_scaffold_2543_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8642..9871
DNA (1230bp) protein (410aa)
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] rbh
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UR13_9SPHN rbh
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase {ECO:0000313|EMBL:ENY80915.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2543_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9965..10672
DNA (708bp) protein (236aa)
Sigma-70 region 2 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URF2_9SPHN rbh
Sigma-70 region 2 {ECO:0000313|EMBL:ENY80914.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
sigma-70 region 2
SCNpilot_expt_500_bf_scaffold_2543_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10677..11327)
DNA (651bp) protein (217aa)
Peptidase S16, lon-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAY7_9SPHN rbh
Peptidase S16, lon-like protein {ECO:0000313|EMBL:ENY80913.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
peptidase S16, lon-like protein; K07157 rbh
SCNpilot_expt_500_bf_scaffold_2543_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11327..12238)
DNA (912bp) protein (304aa)
Thioredoxin-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W080_9SPHN rbh
Thioredoxin-like protein {ECO:0000313|EMBL:ENY80912.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
thioredoxin-like protein; K05838 putative thioredoxin rbh
SCNpilot_expt_500_bf_scaffold_2543_13
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12939..13286
DNA (348bp) protein (116aa)
Mll6267 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q989V4_RHILO
hypothetical protein
Mll6267 protein {ECO:0000313|EMBL:BAB52590.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_500_bf_scaffold_2543_14
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13438..13971
DNA (534bp) protein (178aa)
Uncharacterized conserved protein UCP014995 n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2R9_SPHCR
hypothetical protein
Uncharacterized conserved protein UCP014995 {ECO:0000313|EMBL:AEG50731.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_500_bf_scaffold_2543_15
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13986..14840
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4YZG7_SPHJU rbh
ABC transporter permease {ECO:0000313|EMBL:AJR22537.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2543_16
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14892..15368)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W067_9SPHN
Polyketide cyclase / dehydrase and lipid transport {ECO:0000313|EMBL:KGB59256.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2543_17
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15436..15951)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CQE2_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU74173.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
acetyltransferase
SCNpilot_expt_500_bf_scaffold_2543_18
unknown

Not on your lists

comp(15994..16371)
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2543_19
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16860..19268)
DNA (2409bp) protein (803aa)
CzcA family heavy metal efflux pump n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D9G5_SPHYA rbh
CzcA family heavy metal efflux pump {ECO:0000313|EMBL:EKU74180.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
CzcA family heavy metal efflux protein; K15726 cobalt-zinc-cadmium resistance protein CzcA
Displaying 19 items

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