ggKbase home page

SCNpilot_expt_1000_bf_scaffold_171

Search features with annotation key words

Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_171_1
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..389
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SC33_PELPB
Toxin RelE {ECO:0000313|EMBL:KFC20920.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_171_2
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

386..700
DNA (315bp) protein (105aa)
Transcriptional regulator, XRE family n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VTL7_DYAFD
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACT92960.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_171_3
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

951..1529
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI000303069F
Strain DSM 12611 Contig04, whole genome shotgun sequence {ECO:0000313|EMBL:KIO54047.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
cyclic nucleotide-binding protein
SCNpilot_expt_1000_bf_scaffold_171_4
Weissella cibaria, Weissella, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1569..2207
DNA (639bp) protein (213aa)
putative NADPH-quinone reductase (modulator of drug activity B) (EC:1.6.99.-)
FMN reductase, ssuE n=1 Tax=Pediococcus acidilactici D3 RepID=R0GD00_PEDAC
Weissella cibaria strain MG1 contig000042, whole genome shotgun sequence {ECO:0000313|EMBL:KIU19234.1}; TaxID=137591 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Leuconostocaceae; Weissella.;" source="Weissella cibaria.;"
SCNpilot_expt_1000_bf_scaffold_171_5
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2262..3149
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KZE1_HALH1 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEE48436.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_expt_1000_bf_scaffold_171_6
unknown

Not on your lists

3140..3508
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_171_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3611..4366)
DNA (756bp) protein (252aa)
Helix-turn-helix domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9Z0_NIAKG rbh
helix-turn-helix domain-containing protein rbh
Helix-turn-helix domain protein {ECO:0000313|EMBL:AEW01334.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_171_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4595..5383
DNA (789bp) protein (263aa)
multifunctional protein surE; K03787 5'-nucleotidase [EC:3.1.3.5]
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
5'-nucleotidase SurE n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDR2_NIAKG
SCNpilot_expt_1000_bf_scaffold_171_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5699..6826
DNA (1128bp) protein (376aa)
lipid-A-disaccharide synthase; K00748 lipid-A-disaccharide synthase [EC:2.4.1.182]
Lipid-A-disaccharide synthase {ECO:0000313|EMBL:AEW01514.1}; EC=2.4.1.182 {ECO:0000313|EMBL:AEW01514.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036ED50F
SCNpilot_expt_1000_bf_scaffold_171_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7120..8124
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF92_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97302.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_171_11
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8130..8951)
DNA (822bp) protein (274aa)
Alpha/beta hydrolase fold protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6U7_NIAKG rbh
alpha/beta hydrolase fold protein rbh
Putative hydrolase {ECO:0000313|EMBL:GAO43297.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_1000_bf_scaffold_171_12
unknown

Not on your lists

9056..9385
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_171_13
Capnocytophaga sp. oral taxon 336, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9881..11050)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sp. oral taxon 336 str. F0502 RepID=S3BK93_9FLAO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPE01664.1}; TaxID=1203603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 336 str. F0502.;"
glycosyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_171_14
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11550..14768
DNA (3219bp) protein (1073aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000382E038 rbh
Collagen-binding protein {ECO:0000313|EMBL:KIC91126.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
TonB-dependent receptor plug rbh
SCNpilot_expt_1000_bf_scaffold_171_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14780..16654
DNA (1875bp) protein (625aa)
RagB/SusD domain-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6Z1_NIAKG rbh
Carbohydrate-binding protein SusD {ECO:0000313|EMBL:KIC91127.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
RagB/SusD domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_171_16
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16873..18150
DNA (1278bp) protein (426aa)
Oxidoreductase domain protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W5H2_DYAFD rbh
Oxidoreductase {ECO:0000313|EMBL:KIC89631.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
oxidoreductase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_171_17
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18209..21604
DNA (3396bp) protein (1132aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EF19_RUNSL
Uncharacterized protein {ECO:0000313|EMBL:AKD05380.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_171_18
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21658..22479)
DNA (822bp) protein (274aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|SAAS:SAAS00078538};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] rbh
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJJ7_NIAKG rbh
SCNpilot_expt_1000_bf_scaffold_171_19
Coprobacter fastidiosus, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22637..23509)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI0003645117
Transcriptional regulator {ECO:0000313|EMBL:ERM88193.1}; TaxID=1349822 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter fastidiosus NSB1.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_171_20
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

23671..25194
DNA (1524bp) protein (508aa)
SSS sodium solute transporter superfamily n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VYY3_DYAFD
SSS sodium solute transporter superfamily protein; K03307 solute:Na+ symporter, SSS family
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:ACT95189.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_171_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25263..26201
DNA (939bp) protein (313aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthetase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFA1_NIAKG
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:AEV97311.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_171_22
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26310..27401
DNA (1092bp) protein (364aa)
neuraminidase (sialidase) n=1 Tax=Dyadobacter beijingensis RepID=UPI0003652ECA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT94078.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_171_23

Not on your lists

27482..28771
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036395DF rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN84060.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_171_24
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28829..29719
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000373AFBB
Uncharacterized protein {ECO:0000313|EMBL:KIC95053.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
outer membrane transport energization protein TonB
SCNpilot_expt_1000_bf_scaffold_171_25
unknown

Not on your lists

29859..30497
DNA (639bp) protein (213aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_171_26
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30507..32375)
DNA (1869bp) protein (623aa)
Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZUV9_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EON77867.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_171_27
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

32498..32824
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037F061C
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_expt_1000_bf_scaffold_171_28
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33148..35517
DNA (2370bp) protein (790aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC93704.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
TonB-dependent siderophore receptor id=4058419 bin=GWC2_Bacteroidetes_40_13 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_171_29
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35610..36380)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002F44EB2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH50544.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_171_30
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

36622..37179
DNA (558bp) protein (186aa)
PhnA protein; K06193 phosphonoacetate hydrolase [EC:3.11.1.2]
PhnA protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR49_CHIPD
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
Displaying items 1-30 of 142 in total

View Taxonomy