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SCNpilot_expt_1000_bf_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 358 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_52_1
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2185..3426)
DNA (1242bp) protein (414aa)
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
peptidase M24 n=1 Tax=Burkholderia bryophila RepID=UPI000377DF50
Uncharacterized protein {ECO:0000313|EMBL:AIQ60870.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
SCNpilot_expt_1000_bf_scaffold_52_2
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3527..4666)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EGX1_9RHOB rbh
D-ribose transporter subunit RbsB {ECO:0000313|EMBL:KHQ50127.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
putative rhizopine-binding ABC transporter protein rbh
SCNpilot_expt_1000_bf_scaffold_52_3
Verrucosispora sp. MS100047, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4708..5736)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Arthrobacter sp. AK-YN10 RepID=U1YML0_9MICC rbh
ribose ABC transporter permease; K10440 ribose transport system permease protein rbh
Ribose ABC transporter permease {ECO:0000313|EMBL:AIS85758.1}; TaxID=1410949 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora sp. MS100047.;"
SCNpilot_expt_1000_bf_scaffold_52_4
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5784..6752)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Arthrobacter sp. AK-YN10 RepID=U1Y5N5_9MICC
ribose ABC transport system
Ribose ABC transporter permease {ECO:0000313|EMBL:AID90332.1}; TaxID=1333852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca KONIH1.;"
SCNpilot_expt_1000_bf_scaffold_52_5
Arthrobacter sp. AK-YN10, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6742..8334)
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Arthrobacter sp. AK-YN10 RepID=U1YNP4_9MICC rbh
Uncharacterized protein {ECO:0000313|EMBL:ERI36713.2}; TaxID=1349820 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. AK-YN10.;"
putative sugar ABC transporter, ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_52_6
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8616..9665
DNA (1050bp) protein (350aa)
Transcriptional repressor n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AXT3_AZOBR
Transcriptional regulator {ECO:0000313|EMBL:AIB16044.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_52_7
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9996..10250)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000373512C
LuxR family transcriptional regulator {ECO:0000313|EMBL:ETR77171.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_52_8
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(10995..11984)
DNA (990bp) protein (330aa)
glycoside hydrolase family protein; K01222 6-phospho-beta-glucosidase [EC:3.2.1.86]
Glycoside hydrolase family 4 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CH12_THET1
Glycoside hydrolase family 4 {ECO:0000313|EMBL:ACZ43033.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
SCNpilot_expt_1000_bf_scaffold_52_9
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(11984..12559)
DNA (576bp) protein (192aa)
glycoside hydrolase family protein; K01222 6-phospho-beta-glucosidase [EC:3.2.1.86]
Glycoside hydrolase family 4 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CH12_THET1
Glycoside hydrolase family 4 {ECO:0000313|EMBL:ACZ43033.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
SCNpilot_expt_1000_bf_scaffold_52_10
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

comp(12601..13332)
DNA (732bp) protein (244aa)
GntR family transcriptional regulator n=1 Tax=Bacillus sp. m3-13 RepID=UPI0001E8914C
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
Tax=RBG_13_Chloroflexi_68_17_curated
SCNpilot_expt_1000_bf_scaffold_52_11
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(13332..14267)
DNA (936bp) protein (312aa)
sugar isomerase (SIS); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]
Sugar isomerase (SIS) n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HN67_CYAP4
Sugar isomerase (SIS) {ECO:0000313|EMBL:ACL47194.1}; TaxID=395961 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
SCNpilot_expt_1000_bf_scaffold_52_12
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14714..16105
DNA (1392bp) protein (464aa)
ABC transporter, substrate binding protein (Oligopeptide) n=1 Tax=Pseudovibrio sp. JE062 RepID=B6YYM3_9RHOB rbh
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJY48004.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
dppA; Periplasmic dipeptide transport protein rbh
SCNpilot_expt_1000_bf_scaffold_52_13
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16105..16674
DNA (570bp) protein (190aa)
Periplasmic dipeptide transport protein n=1 Tax=Pseudovibrio sp. (strain FO-BEG1) RepID=G8PVN4_PSEUV
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB76510.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
dppA; Periplasmic dipeptide transport protein
SCNpilot_expt_1000_bf_scaffold_52_14
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16783..17769
DNA (987bp) protein (329aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Pseudovibrio sp. JE062 RepID=B6YYM2_9RHOB rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EEA93487.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
appB; Oligopeptide transport system permease protein AppB; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_52_15
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

17769..18506
DNA (738bp) protein (246aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CQI3_TRURR
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADI14967.1}; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
SCNpilot_expt_1000_bf_scaffold_52_16
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

18479..18907
DNA (429bp) protein (143aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CQI3_TRURR
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADI14967.1}; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
SCNpilot_expt_1000_bf_scaffold_52_17
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18904..21027
DNA (2124bp) protein (708aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Pseudovibrio sp. JE062 RepID=B6YYM0_9RHOB rbh
appF; Oligopeptide transport ATP-binding protein AppF rbh
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:EEA93396.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
SCNpilot_expt_1000_bf_scaffold_52_18
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

21024..22373
DNA (1350bp) protein (450aa)
PHP C-terminal domain protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5V1Q3_ROSS1 rbh
phosphotransferase domain-containing protein rbh
PHP C-terminal domain protein {ECO:0000313|EMBL:ABQ92806.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
SCNpilot_expt_1000_bf_scaffold_52_19
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

22381..23175
DNA (795bp) protein (265aa)
HAD-superfamily hydrolase; K01101 4-nitrophenyl phosphatase [EC:3.1.3.41]
HAD-superfamily hydrolase, subfamily IIA n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CXK2_TRURR
HAD-superfamily hydrolase, subfamily IIA {ECO:0000313|EMBL:ADI14604.1}; Flags: Precursor;; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
SCNpilot_expt_1000_bf_scaffold_52_20
Streptomyces afghaniensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23183..23551)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Streptomyces afghaniensis 772 RepID=S4NLW4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPJ39334.1}; TaxID=1283301 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces afghaniensis 772.;"
sugar phosphate isomerase/epimerase
SCNpilot_expt_1000_bf_scaffold_52_21
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23597..24118)
DNA (522bp) protein (174aa)
Sugar phosphate isomerase/epimerase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KRP7_RHISN
sugar phosphate isomerase/epimerase
Sugar phosphate isomerase/epimerase {ECO:0000313|EMBL:ACP22755.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_52_22
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24115..25293)
DNA (1179bp) protein (393aa)
Oxidoreductase domain protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q4K7_9RHIZ rbh
Oxidoreductase domain protein rbh
Oxidoreductase {ECO:0000313|EMBL:KGJ10034.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
SCNpilot_expt_1000_bf_scaffold_52_23
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25398..26402
DNA (1005bp) protein (335aa)
Transcriptional regulator, LacI family n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LGL7_AGRSH
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADY68199.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_expt_1000_bf_scaffold_52_24
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26447..27793)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PKE9_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKB80844.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_52_25
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27956..29602
DNA (1647bp) protein (549aa)
ABC transporter substrate-binding protein n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002628A2C rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB80845.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_52_26
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29671..31164
DNA (1494bp) protein (498aa)
597aa long hypothetical oligopeptide binding protein APPA n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O58537_PYRHO
Oligopeptide ABC transporter, periplasmic oligopep tide-binding protein OppA {ECO:0000313|EMBL:CDP51832.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
oligopeptide binding protein APPA; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_52_27
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31192..32178
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI0003653510 rbh
ABC transporter permease {ECO:0000313|EMBL:KKB80847.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
ABC-type transporter, permease subunit rbh
SCNpilot_expt_1000_bf_scaffold_52_28
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32216..34789
DNA (2574bp) protein (858aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Gordonia otitidis NBRC 100426 RepID=H5TPA4_9ACTO rbh
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:CDP51834.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative peptide ABC transporter ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_52_29
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34786..35142
DNA (357bp) protein (119aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ41_9RHIZ
Endoribonuclease {ECO:0000313|EMBL:KKB80848.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_52_30
Brettanomyces bruxellensis, Brettanomyces, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(35672..36043)
DNA (372bp) protein (124aa)
Cytidine uridine-specific hydrolase n=1 Tax=Dekkera bruxellensis AWRI1499 RepID=I2JQD4_DEKBR
Cytidine uridine-specific hydrolase {ECO:0000313|EMBL:EIF45186.1}; TaxID=1124627 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Pichiaceae; Brettanomyces.;" source="Brettanomyces bruxellensis AWRI1499.;"
inosine-uridine preferring nucleoside hydrolase
Displaying items 1-30 of 358 in total

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