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SCNpilot_expt_1000_bf_scaffold_212

Search features with annotation key words

Displaying items 1-30 of 301 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_212_1
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

317..2269
DNA (1953bp) protein (651aa)
Phage tail fiber protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CZT0_AGRT5
Uncharacterized protein {ECO:0000313|EMBL:CDN47573.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
phage tail fiber protein
SCNpilot_expt_1000_bf_scaffold_212_2
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2345..3694
DNA (1350bp) protein (450aa)
Phage tail fiber protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CZT0_AGRT5
Uncharacterized protein {ECO:0000313|EMBL:CDN47573.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
phage tail fiber protein
SCNpilot_expt_1000_bf_scaffold_212_3
unknown

Not on your lists

3694..4131
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_212_4
Rhizobium phage RHEph01, Caudovirales, Viruses

Not on your lists

4128..4373
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Rhizobium phage RHEph01 RepID=L7TKD4_9CAUD
Uncharacterized protein {ECO:0000313|EMBL:AGC35560.1}; TaxID=1220601 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Podoviridae.;" source="Rhizobium phage RHEph01.;"
SCNpilot_expt_1000_bf_scaffold_212_5
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4373..4612
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Rhizobium phage RHEph01 RepID=L7TQZ6_9CAUD
Uncharacterized protein {ECO:0000313|EMBL:CDN47576.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_212_6
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4728..6416
DNA (1689bp) protein (563aa)
Putative terminase protein large subunit n=1 Tax=Rhizobium phage RHEph01 RepID=L7TLX3_9CAUD rbh
DNA maturase B {ECO:0000313|EMBL:CDN47578.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
phage-related DNA maturase rbh
SCNpilot_expt_1000_bf_scaffold_212_7
unknown

Not on your lists

comp(6667..6885)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_212_8
unknown

Not on your lists

comp(6885..7052)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_212_9
Rhizobium phage RHEph01, Caudovirales, Viruses

Not on your lists

8061..8954
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Rhizobium phage RHEph01 RepID=L7TK90_9CAUD
Uncharacterized protein {ECO:0000313|EMBL:AGC35515.1}; TaxID=1220601 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Podoviridae.;" source="Rhizobium phage RHEph01.;"
SCNpilot_expt_1000_bf_scaffold_212_10
Hyphomonas sp. L-53-1-40, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9063..9509
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TDY8_PARBH
Uncharacterized protein {ECO:0000313|EMBL:KCZ62556.1}; TaxID=1207058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. L-53-1-40.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_212_11
unknown

Not on your lists

9514..9615
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_212_12
unknown

Not on your lists

9707..9922
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_212_13
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9919..10551
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000370B547 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABS15028.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_212_14
unknown

Not on your lists

10548..10982
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_212_15
unknown

Not on your lists

11095..11319
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_212_16
unknown

Not on your lists

11319..11483
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_212_17
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12040..12546
DNA (507bp) protein (169aa)
Transcriptional regulator, MarR family n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q8U5D3_AGRT5
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CDN47588.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_212_18
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12648..13844
DNA (1197bp) protein (399aa)
Phage-related integrase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q8UG48_AGRT5
Integrative genetic element Ppu40, integrase {ECO:0000313|EMBL:CDN47589.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
int; phage-related integrase
SCNpilot_expt_1000_bf_scaffold_212_19
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13971..15356
DNA (1386bp) protein (462aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Trigger factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAI0_PELHB
cell division trigger factor; K03545 trigger factor
SCNpilot_expt_1000_bf_scaffold_212_20
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15465..16904
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08466.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_212_21
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16932..18167)
DNA (1236bp) protein (412aa)
Putative cytochrome P450 hydroxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH7_PELHB
Cytochrome P450 {ECO:0000313|EMBL:KKB79048.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
cytochrome P450 hydroxylase
SCNpilot_expt_1000_bf_scaffold_212_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18271..18498
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JZR1_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:CDP53656.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_212_23
Thalassobacter sp. 16PALIMAR09, Thalassobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18505..18984)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD793
Uncharacterized protein {ECO:0000313|EMBL:KGL02200.1}; TaxID=1225651 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thalassobacter.;" source="Thalassobacter sp. 16PALIMAR09.;"
SCNpilot_expt_1000_bf_scaffold_212_24
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19177..20025
DNA (849bp) protein (283aa)
Protease n=1 Tax=Celeribacter baekdonensis B30 RepID=K2IGT7_9RHOB
hypothetical protein
Tax=BJP_IG2158_Rhodobacterales_64_37
SCNpilot_expt_1000_bf_scaffold_212_25
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20202..20834
DNA (633bp) protein (211aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ATP-dependent Clp protease proteolytic subunit; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH5_PELHB
SCNpilot_expt_1000_bf_scaffold_212_26
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21007..22284
DNA (1278bp) protein (426aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH4_PELHB
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
SCNpilot_expt_1000_bf_scaffold_212_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22400..23263)
DNA (864bp) protein (288aa)
Xylose isomerase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY89_9RHIZ rbh
Xylose isomerase protein {ECO:0000313|EMBL:EYR83877.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar phosphate isomerase/epimerase rbh
SCNpilot_expt_1000_bf_scaffold_212_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23392..24426
DNA (1035bp) protein (345aa)
Transcriptional regulator, AraC family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1X3_9RHIZ
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EYR83876.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional activator, AraC type
SCNpilot_expt_1000_bf_scaffold_212_29
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24578..25777
DNA (1200bp) protein (400aa)
Membrane-bound lytic murein transglycosylase B pre cursor {ECO:0000313|EMBL:CDP50000.1}; EC=3.2.1.- {ECO:0000313|EMBL:CDP50000.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Membrane-bound lytic murein transglycosylase B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCL8_PELHB
membrane-bound lytic murein transglycosylase B
SCNpilot_expt_1000_bf_scaffold_212_30
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25836..26651
DNA (816bp) protein (272aa)
Patatin n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB10_PELHB
UPF0028 protein YchK {ECO:0000313|EMBL:CDP52804.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
patatin; K07001 NTE family protein
Displaying items 1-30 of 301 in total

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