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SCNpilot_expt_1000_bf_scaffold_1050

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1050_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50..1717
DNA (1668bp) protein (556aa)
formate dehydrogenase subunit alpha (EC:1.7.99.4); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
formate dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI000365658B
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1050_2
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1894..2487
DNA (594bp) protein (198aa)
formate dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI000365658B
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:GAO35633.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
formate dehydrogenase-O, major subunit
SCNpilot_expt_1000_bf_scaffold_1050_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2497..3363
DNA (867bp) protein (289aa)
formate dehydrogenase-N subunit beta n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C974B rbh
formate dehydrogenase subunit beta; K00124 formate dehydrogenase, beta subunit
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1050_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3406..4020
DNA (615bp) protein (205aa)
fdoI; formate dehydrogenase O subunit gamma (EC:1.2.1.2); K00127 formate dehydrogenase, gamma subunit
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367FEEF
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1050_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4085..4996
DNA (912bp) protein (304aa)
formate dehydrogenase accessory protein FdhE; K02380 FdhE protein id=12493142 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
formate dehydrogenase accessory protein FdhE; K02380 FdhE protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1050_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5034..6431
DNA (1398bp) protein (466aa)
L-seryl-tRNA selenium transferase (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003700FDC rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1050_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6428..8335
DNA (1908bp) protein (636aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000371CB5C rbh
selB_[H]; Selenocysteine-specific translation elongation factor
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1050_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8636..9634
DNA (999bp) protein (333aa)
putative periplasmic protease; K04774 serine protease SohB [EC:3.4.21.-]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B2299 rbh
Serine protease SohB {ECO:0000313|EMBL:AAZ98582.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1050_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10013..10690)
DNA (678bp) protein (226aa)
twitching motility protein PilT n=1 Tax=Thiobacillus thioparus RepID=UPI000378EA20
PilT protein domain-containing protein; K07062
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1050_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10687..10926)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361D831
prevent-host-death family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1050_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11043..11312)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003769E2A
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1050_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11388..11990
DNA (603bp) protein (201aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] rbh
LexA repressor id=1324497 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1050_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12033..12692
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKJ8_THIDA
SOS cell division inhibitor SulA; K14160 protein ImuA
Uncharacterized protein {ECO:0000313|EMBL:AAZ96783.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1050_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12730..14133
DNA (1404bp) protein (468aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SEZ7_THIDA rbh
hypothetical protein; K14161 protein ImuB rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ96782.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1050_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14280..17492
DNA (3213bp) protein (1071aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
DNA polymerase III subunit alpha (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7]
Error-prone DNA polymerase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SEZ8_THIDA
SCNpilot_expt_1000_bf_scaffold_1050_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17888..18544)
DNA (657bp) protein (219aa)
Putative uncharacterized protein id=1348717 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1050_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18546..19265)
DNA (720bp) protein (240aa)
Putative lipoprotein id=1348716 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1050_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19262..20728)
DNA (1467bp) protein (489aa)
UPF0061 protein Tbd_1019 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Y1019_THIDA rbh
hypothetical protein rbh
UPF0061 protein Tbd_1019 {ECO:0000255|HAMAP-Rule:MF_00692}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1050_19
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20981..21388)
DNA (408bp) protein (136aa)
twitching motility protein PilT n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI0003608398
Conserved hypothetical protein; putative PIN domain
Tax=CG_Hydro_01
SCNpilot_expt_1000_bf_scaffold_1050_20
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21398..21628)
DNA (231bp) protein (77aa)
Putative transcriptional regulator n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUG9_THIA3
putative transcriptional regulator
Tax=CG_Hydro_01
SCNpilot_expt_1000_bf_scaffold_1050_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21755..22696)
DNA (942bp) protein (314aa)
hypothetical protein id=12493179 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96973.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1050_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22697..23770)
DNA (1074bp) protein (358aa)
selenophosphate synthetase (EC:2.7.9.3); K01008 selenide, water dikinase [EC:2.7.9.3]
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
segregation protein A n=1 Tax=Thiobacillus thioparus RepID=UPI000372E793
SCNpilot_expt_1000_bf_scaffold_1050_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23831..24988
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003767800
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ96975.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1050_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24993..25976)
DNA (984bp) protein (328aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SK20_THIDA
GTP cyclohydrolase subunit MoaA; K03639 molybdenum cofactor biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_1050_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26046..26546
DNA (501bp) protein (167aa)
Molybdopterin-guanine dinucleotide biosynthesis MobB id=1324286 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
molybdopterin-guanine dinucleotide biosynthesis MobB; K03753 molybdopterin-guanine dinucleotide biosynthesis protein B
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1050_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26521..27714
DNA (1194bp) protein (398aa)
molybdopterin molybdochelatase; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
Molybdopterin binding domain id=1324285 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1050_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27711..27965
DNA (255bp) protein (85aa)
molybdenum cofactor biosynthesis protein MoaD n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E81F1
molybdopterin synthase subunit MoaD; K03636 molybdopterin synthase sulfur carrier subunit
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1050_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27970..28425
DNA (456bp) protein (152aa)
molybdopterin synthase subunit MoaE; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
Molybdenum cofactor biosynthesis protein E id=1324283 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1050_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28508..28945
DNA (438bp) protein (146aa)
Transcriptional Regulator, MarR family id=1324273 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
MarR family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1050_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28945..29493
DNA (549bp) protein (183aa)
Probable cytochrome b561 id=1324272 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cytochrome b561; K12262 cytochrome b561
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 50 in total

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