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SCNpilot_expt_1000_bf_scaffold_270

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_270_1
unknown

Not on your lists

1..84
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_270_2
bacterium YEK0313, Bacteria

Not on your lists

89..1063
DNA (975bp) protein (325aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00035ED608
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:CEJ15148.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_270_3
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1060..2061
DNA (1002bp) protein (334aa)
Oligopeptide/dipeptide ABC transporter ATPase n=1 Tax=Oceanibaculum indicum P24 RepID=K2KCS1_9PROT
Oligopeptide/dipeptide ABC transporter ATPase {ECO:0000313|EMBL:EKE75080.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_270_4
Loktanella hongkongensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2080..2871)
DNA (792bp) protein (264aa)
F420-dependent oxidoreductase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] rbh
F420-0:gamma-glutamyl ligase n=1 Tax=Loktanella hongkongensis RepID=UPI000379E9EE rbh
L-glutamate ligase {ECO:0000313|EMBL:EYD70887.1}; TaxID=1122180 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella hongkongensis DSM 17492.;"
SCNpilot_expt_1000_bf_scaffold_270_5
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2892..3842)
DNA (951bp) protein (317aa)
LPPG:FO 2-phospho-L-lactate transferase; K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] rbh
LPPG:FO 2-phospho-L-lactate transferase {ECO:0000313|EMBL:ABL69224.1}; EC=2.7.1.- {ECO:0000313|EMBL:ABL69224.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
LPPG:FO 2-phospho-L-lactate transferase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B130_PARDP rbh
SCNpilot_expt_1000_bf_scaffold_270_6
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3952..5334)
DNA (1383bp) protein (461aa)
GntR family transcriptional regulator n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UF06_MYXSD
GntR family transcriptional regulator {ECO:0000313|EMBL:KFA93046.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_270_7
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5543..6961
DNA (1419bp) protein (473aa)
MmgE/PrpD family protein n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CPS5_DESK7
MmgE/PrpD family protein
MmgE/PrpD family protein {ECO:0000313|EMBL:AEG14934.1}; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
SCNpilot_expt_1000_bf_scaffold_270_8
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7172..8449)
DNA (1278bp) protein (426aa)
hemL; glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8); K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] rbh
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SNF5_9RHOB rbh
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313|EMBL:EAP75995.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
SCNpilot_expt_1000_bf_scaffold_270_9
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8765..9616
DNA (852bp) protein (284aa)
SIS domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R3N6_9RHOB rbh
SIS domain protein {ECO:0000313|EMBL:EEE46008.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_270_10
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9650..10033
DNA (384bp) protein (128aa)
Carboxymuconolactone decarboxylase family protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6DZB6_9RHOB
Carboxymuconolactone decarboxylase family protein {ECO:0000313|EMBL:EDM32501.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
carboxymuconolactone decarboxylase-like protein
SCNpilot_expt_1000_bf_scaffold_270_11
unknown

Not on your lists

comp(10282..11100)
DNA (819bp) protein (273aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_270_12
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11201..11590)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ICQ8_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS65801.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_270_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11605..13044)
DNA (1440bp) protein (480aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A6J5_RHIET rbh
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:EGE59912.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
Relaxase/mobilization nuclease family protein rbh
SCNpilot_expt_1000_bf_scaffold_270_14
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13041..13391)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EPR2_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50916.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_270_15
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13801..14127)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J1V7_POLGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ72018.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_270_16
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14246..14608)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J1V7_POLGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ72018.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_270_17
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14608..15405)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J1V8_POLGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ72019.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_270_18
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15510..17150
DNA (1641bp) protein (547aa)
Type IV secretory pathway, VirD4 component n=1 Tax=Cycloclasticus zancles 7-ME RepID=S5U0Q0_9GAMM rbh
TraG_1 protein {ECO:0000313|EMBL:KIT16375.1}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
Type IV secretory pathway, VirD4 component rbh
SCNpilot_expt_1000_bf_scaffold_270_19
unknown

Not on your lists

17143..17454
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_270_20
unknown

Not on your lists

comp(17499..17750)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_270_21
unknown

Not on your lists

17906..18475
DNA (570bp) protein (190aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_270_22
GWA2_OD1_44_12, Parcubacteria, Bacteria

Not on your lists

comp(18486..19583)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003724415
Uncharacterized protein {ECO:0000313|EMBL:KKT34928.1}; Flags: Fragment;; TaxID=1618829 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_44_12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_270_23
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19719..20063)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EPQ5_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50909.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_270_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20060..20269)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQL9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61478.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_270_25
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20301..20534)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI0002E21D9F
Uncharacterized protein {ECO:0000313|EMBL:EGE59902.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_270_26
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21127..21621
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QGT7_RHOPT
Uncharacterized protein {ECO:0000313|EMBL:BAR58108.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_270_27
unknown

Not on your lists

21710..22300
DNA (591bp) protein (197aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_270_28
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22371..22736)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI000317C6E5
phosphoglycerate kinase
Phosphoglycerate kinase {ECO:0000313|EMBL:ADZ69061.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_270_29
Acetobacter tropicalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23133..25433)
DNA (2301bp) protein (767aa)
Uncharacterized protein n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VHI5_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:GAA09830.1}; TaxID=749388 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter tropicalis NBRC 101654.;"
Hypothetical protein
SCNpilot_expt_1000_bf_scaffold_270_30
Pseudoalteromonas rubra, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25455..28625)
DNA (3171bp) protein (1057aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003764E6C rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ07071.1}; TaxID=43658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas rubra.;"
hypothetical protein rbh
Displaying items 1-30 of 109 in total

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