ggKbase home page

SCNpilot_expt_1000_bf_scaffold_962

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_962_1
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25..1368)
DNA (1344bp) protein (448aa)
UPI0003CE1A54 related cluster n=1 Tax=unknown RepID=UPI0003CE1A54
Chemotaxis protein MotD {ECO:0000313|EMBL:ESY21880.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
chemotaxis protein MotD; K10565 chemotaxis protein MotD
SCNpilot_expt_1000_bf_scaffold_962_2
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1365..2738)
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YA79_MESOW rbh
hypothetical protein; K10564 chemotaxis protein MotC rbh
Uncharacterized protein {ECO:0000313|EMBL:AEH86478.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_962_3
Mesorhizobium sp. LNJC394B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2735..4051)
DNA (1317bp) protein (439aa)
Flagellar motor protein MotB n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G315_9RHIZ
Flagellar motor protein MotB {ECO:0000313|EMBL:ESY22956.1}; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
flagellar motor protein
SCNpilot_expt_1000_bf_scaffold_962_4
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4048..4668)
DNA (621bp) protein (207aa)
UPI0003CEAD17 related cluster n=1 Tax=unknown RepID=UPI0003CEAD17
Uncharacterized protein {ECO:0000313|EMBL:ESY67691.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_962_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4665..6323)
DNA (1659bp) protein (553aa)
Flagellar M-ring protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TFV6_MESCW rbh
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
flagellar M-ring protein FliF; K02409 flagellar M-ring protein FliF rbh
SCNpilot_expt_1000_bf_scaffold_962_6
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6447..7517)
DNA (1071bp) protein (357aa)
Flagellin domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YA83_MESOW rbh
Flagellin C {ECO:0000313|EMBL:CDX32655.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
flagellin domain-containing protein; K02406 flagellin rbh
SCNpilot_expt_1000_bf_scaffold_962_7
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7640..8692)
DNA (1053bp) protein (351aa)
Flagellin FlaA n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HD0_RHILO rbh
flagellin FlaA; K02406 flagellin rbh
Flagellin C {ECO:0000313|EMBL:CDX11437.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_expt_1000_bf_scaffold_962_8
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8990..10072)
DNA (1083bp) protein (361aa)
Flagellin/flagellar hook associated protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KGJ5_MESAW
flagellin/flagellar hook associated protein
Flagellin/flagellar hook associated protein {ECO:0000313|EMBL:AGB44452.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_962_9
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10267..10998)
DNA (732bp) protein (244aa)
UPI0003D024FF related cluster n=1 Tax=unknown RepID=UPI0003D024FF
Flagellar biosynthesis protein {ECO:0000313|EMBL:CDX11439.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
flagellar biosynthetic protein FliP; K02419 flagellar biosynthetic protein FliP
SCNpilot_expt_1000_bf_scaffold_962_10
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10995..11483)
DNA (489bp) protein (163aa)
flagellar basal body-associated protein FliL n=1 Tax=Rhizobium loti RepID=UPI00035F67B4
Flagellar basal body-associated protein FliL {ECO:0000313|EMBL:EXL09512.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein; K02415 flagellar FliL protein
SCNpilot_expt_1000_bf_scaffold_962_11
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11508..12212)
DNA (705bp) protein (235aa)
UPI0003CF11A0 related cluster n=1 Tax=unknown RepID=UPI0003CF11A0
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Flags: Precursor;; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
flagellar basal body L-ring protein
SCNpilot_expt_1000_bf_scaffold_962_12
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12209..12790)
DNA (582bp) protein (194aa)
Mlr2920 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HD4_RHILO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY67461.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_expt_1000_bf_scaffold_962_13
unknown

Not on your lists

13049..13402
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_962_14
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14023..14493)
DNA (471bp) protein (157aa)
UPI0003CE70E1 related cluster n=1 Tax=unknown RepID=UPI0003CE70E1
Flagella basal body P-ring formation protein FlgA {ECO:0000256|RuleBase:RU362063}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
flagella basal body P-ring formation protein FlgA
SCNpilot_expt_1000_bf_scaffold_962_15
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14499..15287)
DNA (789bp) protein (263aa)
Flagellar basal body rod protein FlgG n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YEK0_9RHIZ
Flagellar basal body rod protein FlgG {ECO:0000313|EMBL:EHH09809.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
flagellar basal-body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG
SCNpilot_expt_1000_bf_scaffold_962_16
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15334..15594)
DNA (261bp) protein (87aa)
Flagellar hook-basal body protein FliE n=2 Tax=Mesorhizobium RepID=V7F2N4_9RHIZ
flagellar hook-basal body complex protein FliE; K02408 flagellar hook-basal body complex protein FliE
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
SCNpilot_expt_1000_bf_scaffold_962_17
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15597..16010)
DNA (414bp) protein (138aa)
Flagellar basal-body rod protein FlgC n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HD9_RHILO
flgC; flagellar basal body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_expt_1000_bf_scaffold_962_18
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16017..16397)
DNA (381bp) protein (127aa)
UPI0003CF6087 related cluster n=1 Tax=unknown RepID=UPI0003CF6087
Flagellar basal body rod protein FlgB {ECO:0000313|EMBL:ESY67678.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
flgB; flagellar basal-body rod protein FlgB; K02387 flagellar basal-body rod protein FlgB
SCNpilot_expt_1000_bf_scaffold_962_19
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16532..18046)
DNA (1515bp) protein (505aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde dehydrogenase n=1 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GP75_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:ESW93238.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
SCNpilot_expt_1000_bf_scaffold_962_20
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18125..19465)
DNA (1341bp) protein (447aa)
Probable sigma-70 factor, ECF subfamily n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HH3_RHILO
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Probable sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:BAB49893.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_962_21
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19462..19836)
DNA (375bp) protein (125aa)
UPI0003D050F5 related cluster n=1 Tax=unknown RepID=UPI0003D050F5
Uncharacterized protein {ECO:0000313|EMBL:CDX31778.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_962_22
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20240..20950
DNA (711bp) protein (237aa)
Transcriptional regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HF2_RHILO
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAB49914.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_962_23
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20947..21711
DNA (765bp) protein (255aa)
UPI0003D05949 related cluster n=1 Tax=unknown RepID=UPI0003D05949
LuxR family transcriptional regulator {ECO:0000313|EMBL:ESZ29110.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_962_24
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21701..22141)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YAA4_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY78947.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_expt_1000_bf_scaffold_962_25
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22138..23220)
DNA (1083bp) protein (361aa)
Flagellar biosynthetic protein FlhB n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TFX7_MESCW rbh
flagellar biosynthetic protein FlhB; K02401 flagellar biosynthetic protein FlhB rbh
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:ADV11119.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_962_26
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23234..24250)
DNA (1017bp) protein (339aa)
UPI0003CE5074 related cluster n=1 Tax=unknown RepID=UPI0003CE5074 rbh
Flagellar motor switch protein FliG {ECO:0000313|EMBL:ESW77724.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
flagellar motor switch protein FliG; K02410 flagellar motor switch protein FliG rbh
SCNpilot_expt_1000_bf_scaffold_962_27
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24297..24683)
DNA (387bp) protein (129aa)
Flagellar motor switch protein FliN n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YEL0_9RHIZ
Flagellar motor switch protein FliN {ECO:0000313|EMBL:EHH09819.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
flagellar motor switch protein FliN; K02417 flagellar motor switch protein FliN/FliY
SCNpilot_expt_1000_bf_scaffold_962_28
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24722..25546)
DNA (825bp) protein (275aa)
UPI0003CE7C7E related cluster n=1 Tax=unknown RepID=UPI0003CE7C7E rbh
Flagellar motor switch protein FliM {ECO:0000313|EMBL:EHH09818.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
flagellar motor switch protein FliM; K02416 flagellar motor switch protein FliM rbh
SCNpilot_expt_1000_bf_scaffold_962_29
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26307..26681
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A6C4_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE59941.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_962_30
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26704..28515
DNA (1812bp) protein (604aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TFX2_MESCW rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV11114.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
Displaying items 1-30 of 50 in total

View Taxonomy