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SCNpilot_expt_1000_bf_scaffold_5288

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5288_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..854)
DNA (852bp) protein (284aa)
UPI0003CFC718 related cluster n=1 Tax=unknown RepID=UPI0003CFC718
Photosystem reaction center subunit H {ECO:0000313|EMBL:ESZ21931.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5288_2
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1095..1997
DNA (903bp) protein (301aa)
Sphingosine/diacylglycerol kinase-like enzyme n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KIQ2_MESAW rbh
sphingosine/diacylglycerol kinase-like enzyme rbh
Sphingosine/diacylglycerol kinase-like enzyme {ECO:0000313|EMBL:AGB43943.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_5288_3
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2001..2465)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003768398
Uncharacterized protein {ECO:0000313|EMBL:AID32857.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5288_4
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2478..2804)
DNA (327bp) protein (109aa)
UPI0003D059B6 related cluster n=1 Tax=unknown RepID=UPI0003D059B6
Uncharacterized protein {ECO:0000313|EMBL:ESZ26740.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5288_5
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3078..3752
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FGC5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV11134.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_expt_1000_bf_scaffold_5288_6
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3777..4196
DNA (420bp) protein (140aa)
UPI0003CDEC4F related cluster n=1 Tax=unknown RepID=UPI0003CDEC4F
Response regulator receiver protein {ECO:0000313|EMBL:CDX34661.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
CheY-like receiver domain-containing protein
SCNpilot_expt_1000_bf_scaffold_5288_7
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4193..4741)
DNA (549bp) protein (183aa)
RNA polymerase sigma factor n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8D7_MESCW rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily rbh
SCNpilot_expt_1000_bf_scaffold_5288_8
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4745..4963)
DNA (219bp) protein (73aa)
Msl3698 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98FM9_RHILO
hypothetical protein
Msl3698 protein {ECO:0000313|EMBL:BAB50538.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_5288_9
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5171..5965
DNA (795bp) protein (265aa)
Chemotaxis protein CheY n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FDK9_9RHIZ
Chemotaxis protein CheY {ECO:0000313|EMBL:ESX68737.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
CheY-like receiver domain-containing protein
SCNpilot_expt_1000_bf_scaffold_5288_10
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6042..6206
DNA (165bp) protein (55aa)
UPF0391 membrane protein msr3702 n=7 Tax=Mesorhizobium RepID=Y3702_RHILO
UPF0391 membrane protein BG36_06210 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5288_11
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6393..7421
DNA (1029bp) protein (343aa)
HWE histidine kinase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YDY2_9RHIZ
Histidine kinase {ECO:0000313|EMBL:EXL06646.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
HWE histidine kinase
SCNpilot_expt_1000_bf_scaffold_5288_12
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7490..7813
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YDY4_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH10057.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5288_13
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7902..8150
DNA (249bp) protein (83aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YDY5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EZQ14470.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5288_14
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8211..8837)
DNA (627bp) protein (209aa)
UPI0003CFA007 related cluster n=1 Tax=unknown RepID=UPI0003CFA007
Histidine kinase {ECO:0000313|EMBL:EXL06648.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
CHASE domain-containing protein
SCNpilot_expt_1000_bf_scaffold_5288_15
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8786..9886)
DNA (1101bp) protein (367aa)
histidine kinase n=1 Tax=Rhizobium loti RepID=UPI000375FC52
HWE histidine kinase family protein {ECO:0000313|EMBL:AID32870.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
CHASE domain-containing protein
SCNpilot_expt_1000_bf_scaffold_5288_16
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9943..10401)
DNA (459bp) protein (153aa)
ABC transporter; K10545 D-xylose transport system ATP-binding protein [EC:3.6.3.17]
UPI0003CF2ABA related cluster n=1 Tax=unknown RepID=UPI0003CF2ABA
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EZQ14472.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_5288_17
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10401..10715)
DNA (315bp) protein (105aa)
ABC-transport system ATP binding protein; K10545 D-xylose transport system ATP-binding protein [EC:3.6.3.17]
sugar ABC transporter ATP-binding protein n=1 Tax=Rhizobium loti RepID=UPI00036A94AB
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESX68742.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
SCNpilot_expt_1000_bf_scaffold_5288_18
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10729..12045)
DNA (1317bp) protein (439aa)
Xylose transport permease protein xylH n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YDY8_9RHIZ rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:EXL06650.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
inner-membrane translocator; K10544 D-xylose transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_5288_19
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12364..13404)
DNA (1041bp) protein (347aa)
D-xylose transporter subunit periplasmic-binding component of ABC superfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F478_9RHIZ
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:EXL06651.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
D-xylose ABC transporter periplasmic substrate-binding protein; K10543 D-xylose transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_5288_20
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13642..14481
DNA (840bp) protein (280aa)
ROK family transcriptional regulator n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FDP1_9RHIZ
ROK family transcriptional regulator {ECO:0000313|EMBL:ESX68745.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
ROK family protein
SCNpilot_expt_1000_bf_scaffold_5288_21
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14465..14875
DNA (411bp) protein (137aa)
UPI0003CFC7EF related cluster n=1 Tax=unknown RepID=UPI0003CFC7EF
ROK family transcriptional regulator {ECO:0000313|EMBL:EZQ14475.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
xyl repressor
SCNpilot_expt_1000_bf_scaffold_5288_22
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14904..15593)
DNA (690bp) protein (230aa)
Phosphate regulon transcriptional regulatory protein PhoB n=4 Tax=Mesorhizobium RepID=E8T8C4_MESCW
phosphate regulon transcriptional regulatory protein PhoB; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
Phosphate regulon transcriptional regulatory protein PhoB {ECO:0000313|EMBL:ADV10580.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_5288_23
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15619..16320)
DNA (702bp) protein (234aa)
UPI0003CDEED6 related cluster n=1 Tax=unknown RepID=UPI0003CDEED6
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
phosphate uptake regulatory protein PhoU; K02039 phosphate transport system protein
SCNpilot_expt_1000_bf_scaffold_5288_24
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16362..16808)
DNA (447bp) protein (149aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
phosphate ABC transporter ATPase; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
phosphate ABC transporter ATP-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DE7D5E
SCNpilot_expt_1000_bf_scaffold_5288_25
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17194..18510)
DNA (1317bp) protein (439aa)
UPI0003D05B2D related cluster n=1 Tax=unknown RepID=UPI0003D05B2D rbh
Phosphate ABC transporter permease {ECO:0000313|EMBL:ESZ26719.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
phosphate ABC transporter permease; K02038 phosphate transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_5288_26
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18507..19157)
DNA (651bp) protein (217aa)
Phosphate ABC transporter, inner membrane subunit PstC n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3N3_9RHIZ
phosphate ABC transporter permease; K02037 phosphate transport system permease protein
Phosphate ABC transporter permease {ECO:0000313|EMBL:ESZ26718.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
Displaying 26 items

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