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SCNpilot_expt_1000_bf_scaffold_1007

Search features with annotation key words

Displaying items 1-30 of 156 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1007_1
unknown

Not on your lists

3..68
DNA (66bp) protein (22aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1007_2
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(131..412)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000347E52A
Uncharacterized protein {ECO:0000313|EMBL:EYT60339.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1007_3
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(399..806)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002DCC953
Uncharacterized protein {ECO:0000313|EMBL:EYT60340.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1007_4
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(808..1227)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003495BF3
Uncharacterized protein {ECO:0000313|EMBL:KJL22276.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1007_5
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1372..2898)
DNA (1527bp) protein (509aa)
Protoporphyrinogen oxidase {ECO:0000313|EMBL:KJQ55229.1}; EC=1.3.3.4 {ECO:0000313|EMBL:KJQ55229.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
protoporphyrinogen oxidase; K00231 oxygen-dependent protoporphyrinogen oxidase [EC:1.3.3.4]
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5L1C1_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_1007_6
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2977..3990)
DNA (1014bp) protein (338aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hemE; uroporphyrinogen-III decarboxylase; K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
uroporphyrinogen decarboxylase n=1 Tax=Microbacterium barkeri RepID=UPI00030AFF77 rbh
SCNpilot_expt_1000_bf_scaffold_1007_7
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

4080..5363
DNA (1284bp) protein (428aa)
glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase [EC:1.2.1.70]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00036BE722 rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1007_8
Mycobacterium farcinogenes, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5410..5817
DNA (408bp) protein (136aa)
ribosomal subunit interface protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000377AAA8
Rifampin ADP-ribosyl transferase {ECO:0000313|EMBL:CDP89749.1}; TaxID=1802 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium farcinogenes.;"
arr; rifampin ADP-ribosyl transferase
SCNpilot_expt_1000_bf_scaffold_1007_9
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5909..6259)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Pseudoclavibacter faecalis RepID=UPI00036CE4E7
Uncharacterized protein {ECO:0000313|EMBL:KJQ55232.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1007_10
Arthrobacter sp. AK-YN10, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6256..6699)
DNA (444bp) protein (148aa)
Repressor protein n=1 Tax=Arthrobacter sp. AK-YN10 RepID=U1YRL7_9MICC
Uncharacterized protein {ECO:0000313|EMBL:ERI38155.1}; TaxID=1349820 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. AK-YN10.;"
transcriptional regulator, Cro/CI family/nucleotidyltransferase
SCNpilot_expt_1000_bf_scaffold_1007_11
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6792..7379
DNA (588bp) protein (196aa)
Iron-sulfur cluster assembly protein HesB n=1 Tax=Microbacterium maritypicum MF109 RepID=T5L1B8_9MICO rbh
HhH-GPD superfamily base excision DNA repair protein {ECO:0000313|EMBL:KJL22270.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
HhH-GPD family protein
SCNpilot_expt_1000_bf_scaffold_1007_12
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7438..7860
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KR01_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KDA06787.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1007_13
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7865..8533)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NAY7_MICTS
Uncharacterized protein {ECO:0000313|EMBL:KJL34272.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1007_14
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8564..9049)
DNA (486bp) protein (162aa)
Glycerol-3-phosphate cytidylyltransferase {ECO:0000313|EMBL:KJL34352.1}; EC=2.7.7.39 {ECO:0000313|EMBL:KJL34352.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2H7N1_9SPHI
cytidyltransferase
SCNpilot_expt_1000_bf_scaffold_1007_15
unknown

Not on your lists

comp(9104..9829)
DNA (726bp) protein (242aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1007_16
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9859..10038)
DNA (180bp) protein (60aa)
Cyclodextrin-binding protein {ECO:0000313|EMBL:KJL30520.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
SCNpilot_expt_1000_bf_scaffold_1007_17
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10180..11481
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F6AFFD rbh
Uncharacterized protein {ECO:0000313|EMBL:KJL34266.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1007_18
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11491..12516)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003639BD4 rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:EYT60419.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1007_19
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12607..14100
DNA (1494bp) protein (498aa)
glycoside hydrolase family protein; K01191 alpha-mannosidase [EC:3.2.1.24]
alpha-mannosidase n=1 Tax=Microbacterium barkeri RepID=UPI000307F0C6
Contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95148.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
SCNpilot_expt_1000_bf_scaffold_1007_20
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14112..15584
DNA (1473bp) protein (491aa)
Mannosylglycerate hydrolase {ECO:0000313|EMBL:KJL34270.1}; EC=3.2.1.170 {ECO:0000313|EMBL:KJL34270.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
glycoside hydrolase family protein; K01191 alpha-mannosidase [EC:3.2.1.24]
alpha-mannosidase n=1 Tax=Microbacterium barkeri RepID=UPI000307F0C6
SCNpilot_expt_1000_bf_scaffold_1007_21
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15914..16231
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI000306B263
ECF RNA polymerase sigma factor SigJ {ECO:0000313|EMBL:KJL34278.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
ECF subfamily RNA polymerase sigma factor
SCNpilot_expt_1000_bf_scaffold_1007_22
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16353..17042)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AQZ8_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD84582.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_1007_23
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17133..18167
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A7L7_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC57074.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1007_24
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18169..19056
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AD15_9MICO rbh
Inorganic polyphosphate kinase {ECO:0000313|EMBL:KIC57073.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1007_25
unknown

Not on your lists

comp(19066..19620)
DNA (555bp) protein (185aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1007_26
unknown

Not on your lists

comp(19715..20413)
DNA (699bp) protein (233aa)
UPI0003C7FB72 related cluster n=1 Tax=unknown RepID=UPI0003C7FB72
SCNpilot_expt_1000_bf_scaffold_1007_27
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20584..20694
DNA (111bp) protein (37aa)
Uncharacterized protein {ECO:0000313|EMBL:KJL25828.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
SCNpilot_expt_1000_bf_scaffold_1007_28
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(20782..22110)
DNA (1329bp) protein (443aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
glyS; glycyl-tRNA synthetase (class II); K01880 glycyl-tRNA synthetase [EC:6.1.1.14]
glycine-tRNA synthetase subunit beta n=1 Tax=Microbacterium barkeri RepID=UPI00037EB44C
SCNpilot_expt_1000_bf_scaffold_1007_29
Brevibacterium casei, Brevibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22390..23277
DNA (888bp) protein (296aa)
Uncharacterized protein (Fragment) n=1 Tax=Brevibacterium casei S18 RepID=K9AF27_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EKU45889.1}; Flags: Fragment;; TaxID=1229781 species="Bacteria; Actinobacteria; Micrococcales; Brevibacteriaceae; Brevibacterium.;" source="Brevibacterium casei S18.;"
SCNpilot_expt_1000_bf_scaffold_1007_30
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23285..24448
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BIZ8_SANKS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ20190.1}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
Displaying items 1-30 of 156 in total

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