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SCNpilot_expt_1000_bf_scaffold_3352

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3352_1
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(123..782)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003497B19
Putative HTH-type transcriptional regulator YdfH {ECO:0000313|EMBL:KJL21345.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3352_2
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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851..1666
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000361F2B3
Putative esterase/lipase {ECO:0000313|EMBL:GAD34020.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
alpha/beta hydrolase
SCNpilot_expt_1000_bf_scaffold_3352_3
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1680..1814)
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5L6I9_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM86851.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
SCNpilot_expt_1000_bf_scaffold_3352_4
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1811..3433)
DNA (1623bp) protein (541aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034A8E1A rbh
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
SNF family Na+-dependent transporter; K03308 neurotransmitter:Na+ symporter, NSS family rbh
SCNpilot_expt_1000_bf_scaffold_3352_5
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3494..4510)
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036ADA54 rbh
Contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIP94982.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3352_6
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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4640..4990
DNA (351bp) protein (117aa)
hypothetical protein; K03534 L-rhamnose mutarotase [EC:5.1.3.-]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003022AB7
Contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIP94973.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
SCNpilot_expt_1000_bf_scaffold_3352_7
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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4987..6150
DNA (1164bp) protein (388aa)
Xylose isomerase {ECO:0000313|EMBL:KJL29629.1}; EC=5.3.1.5 {ECO:0000313|EMBL:KJL29629.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
rhamnose isomerase n=1 Tax=Microbacterium barkeri RepID=UPI0002DC86D2 rbh
sugar isomerase
SCNpilot_expt_1000_bf_scaffold_3352_8
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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6258..8273
DNA (2016bp) protein (672aa)
Short-chain dehydrogenase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K0M8_9MICO rbh
Contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIP94971.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
rhaD; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3352_9
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8380..9780
DNA (1401bp) protein (467aa)
Rhamnulokinase {ECO:0000313|EMBL:KJL19220.1}; EC=2.7.1.5 {ECO:0000313|EMBL:KJL19220.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein; K00848 rhamnulokinase [EC:2.7.1.5]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00030BABC8 rbh
SCNpilot_expt_1000_bf_scaffold_3352_10
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9816..10139)
DNA (324bp) protein (108aa)
Thermostable beta-glucosidase B {ECO:0000313|EMBL:KJL27319.1}; EC=3.2.1.21 {ECO:0000313|EMBL:KJL27319.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
beta-glucosidase (EC:3.2.1.21); K05349 beta-glucosidase [EC:3.2.1.21]
Beta-glucosidase n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XM35_MICPN
SCNpilot_expt_1000_bf_scaffold_3352_11
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(10222..11094)
DNA (873bp) protein (291aa)
Oxidoreductase n=3 Tax=Amycolatopsis mediterranei RepID=G0FWF3_AMYMS
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:AEK45281.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_expt_1000_bf_scaffold_3352_12
Streptomyces hygroscopicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(11087..13291)
DNA (2205bp) protein (735aa)
Major facilitator superfamily permease n=1 Tax=Streptomyces hygroscopicus subsp. jinggangensis TL01 RepID=M1N0N6_STRHY rbh
major facilitator superfamily permease rbh
Major facilitator superfamily permease {ECO:0000313|EMBL:AEY86129.1}; TaxID=1133850 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp. jinggangensis (strain 5008).;"
SCNpilot_expt_1000_bf_scaffold_3352_13
Gordonia namibiensis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(13399..15237)
DNA (1839bp) protein (613aa)
Putative non-heme haloperoxidase n=1 Tax=Gordonia namibiensis NBRC 108229 RepID=K6WI00_9ACTO rbh
Putative non-heme haloperoxidase {ECO:0000313|EMBL:GAB98950.1}; TaxID=1208314 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia namibiensis NBRC 108229.;"
non-heme haloperoxidase rbh
Displaying 13 items

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