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SCNpilot_expt_500_p_scaffold_1546

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1546_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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707..2704
DNA (1998bp) protein (666aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
acetate--CoA ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U0W0_9PROT
SCNpilot_expt_500_p_scaffold_1546_2
unknown

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comp(2759..4219)
DNA (1461bp) protein (487aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1546_3
unknown

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4663..5559
DNA (897bp) protein (299aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1546_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5728..6144
DNA (417bp) protein (139aa)
30S ribosomal protein S6 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RS6_PARL1
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
SCNpilot_expt_500_p_scaffold_1546_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6156..6407
DNA (252bp) protein (84aa)
30S ribosomal protein S18 n=1 Tax=Methylopila sp. M107 RepID=UPI00037FC8A4
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
SCNpilot_expt_500_p_scaffold_1546_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6421..7344
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Thalassospira lucentensis RepID=UPI0003B7989B
Uncharacterized protein {ECO:0000313|EMBL:AIL12754.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1546_7
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7354..7860
DNA (507bp) protein (169aa)
50S ribosomal protein L9 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I2D2_RHOVT
50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
SCNpilot_expt_500_p_scaffold_1546_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7990..9480
DNA (1491bp) protein (497aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] rbh
DNA helicase {ECO:0000313|EMBL:AIL12755.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Replicative DNA helicase, putative id=3645224 bin=GWC2_Alphaproteobacteria_42_16 species=Azospirillum amazonense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
SCNpilot_expt_500_p_scaffold_1546_9
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9467..10663
DNA (1197bp) protein (399aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201};; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
dadB; alanine racemase; K01775 alanine racemase [EC:5.1.1.1]
alanine racemase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ABE3
SCNpilot_expt_500_p_scaffold_1546_10
unknown

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comp(10750..11691)
DNA (942bp) protein (314aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1546_11
unknown

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comp(11766..13031)
DNA (1266bp) protein (422aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1546_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13047..13490)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DSZ3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL12760.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1546_13

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comp(13447..14772)
DNA (1326bp) protein (442aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=uncultured bacterium RepID=K2FED3_9BACT rbh
SCNpilot_expt_500_p_scaffold_1546_14
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(15009..15308)
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZI91_BRAFL
Uncharacterized protein {ECO:0000313|EMBL:AKB55225.1}; TaxID=1434108 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri MS.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1546_15
Branchiostoma floridae, Branchiostoma, Chordata, Metazoa

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comp(15315..16304)
DNA (990bp) protein (330aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3YRJ7_BRAFL
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEN57194.1}; Flags: Fragment;; TaxID=7739 species="Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma.;" source="Branchiostoma floridae (Florida lancelet) (Amphioxus).;"
Displaying 15 items

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