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SCNpilot_expt_500_p_scaffold_1741

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1741_1
unknown

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1..321
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1741_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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323..859
DNA (537bp) protein (179aa)
Transcription termination/antitermination protein NusG n=1 Tax=uncultured bacterium RepID=K2DX93_9BACT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
nusG; transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG
SCNpilot_expt_500_p_scaffold_1741_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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959..1387
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GN79_9PROT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rplK; 50S ribosomal subunit protein L11
SCNpilot_expt_500_p_scaffold_1741_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1391..2086
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=RL1_RHOCS rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 rbh
SCNpilot_expt_500_p_scaffold_1741_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2307..2840
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0003666C0B
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
50S ribosomal protein L10
SCNpilot_expt_500_p_scaffold_1741_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2882..3259
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=2 Tax=Bartonella RepID=J0QJ79_9RHIZ
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_expt_500_p_scaffold_1741_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3485..7648
DNA (4164bp) protein (1388aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9S9K0_PHAFV
SCNpilot_expt_500_p_scaffold_1741_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7693..11868
DNA (4176bp) protein (1392aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpoC; RNA polymerase, beta prime subunit; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z362_AZOL4
SCNpilot_expt_500_p_scaffold_1741_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12150..12878
DNA (729bp) protein (243aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13183.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1741_10
unknown

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comp(12987..13535)
DNA (549bp) protein (183aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1741_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13714..14385
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) RepID=S2KFQ6_MUCC1
Uncharacterized protein {ECO:0000313|EMBL:AIL13182.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
NADPH-dependent FMN reductase family protein
SCNpilot_expt_500_p_scaffold_1741_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14408..14695
DNA (288bp) protein (96aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13181.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Displaying 12 items

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