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SCNpilot_expt_500_p_scaffold_673

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_673_1
unknown

Not on your lists

comp(285..521)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_673_2
unknown

Not on your lists

comp(695..1627)
DNA (933bp) protein (311aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_673_3
unknown

Not on your lists

comp(2226..3485)
DNA (1260bp) protein (420aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_673_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3487..4206
DNA (720bp) protein (240aa)
transcriptional regulator n=1 Tax=Acetobacter aceti RepID=UPI00022607A4
Probable transcriptional regulatory protein IM40_06725 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_673_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4226..4723
DNA (498bp) protein (166aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ruvC; Holliday junction resolvase (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=uncultured bacterium RepID=K2EI94_9BACT
SCNpilot_expt_500_p_scaffold_673_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4705..5328
DNA (624bp) protein (208aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Holliday junction ATP-dependent DNA helicase RuvA id=4799322 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
ruvA; Holliday junction DNA helicase RuvA
SCNpilot_expt_500_p_scaffold_673_7
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5332..6324
DNA (993bp) protein (331aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003732693 rbh
ruvB; Holliday junction DNA helicase ruvB rbh
SCNpilot_expt_500_p_scaffold_673_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6361..7491)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Gloeocapsa sp. PCC 73106 RepID=L8LJV6_9CHRO
Uncharacterized protein {ECO:0000313|EMBL:AIL13253.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_673_9
unknown

Not on your lists

7952..8941
DNA (990bp) protein (330aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_673_10
unknown

Not on your lists

8941..9432
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_673_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10717..12339
DNA (1623bp) protein (541aa)
Dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2J635_9PROT
Electron transfer flavoprotein-ubiquinone oxidoreductase {ECO:0000313|EMBL:AIL13251.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative electron transfer flavoprotein-ubiquinone oxidoreductase
SCNpilot_expt_500_p_scaffold_673_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12349..13176
DNA (828bp) protein (276aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
dapB; dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CEB2_9RHOB
SCNpilot_expt_500_p_scaffold_673_13
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13196..13978
DNA (783bp) protein (261aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
RNA methyltransferase, TrmH family, group 1; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-]
RNA methyltransferase, TrmH family, group 1 n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ISG6_RHOCS
SCNpilot_expt_500_p_scaffold_673_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14107..14721
DNA (615bp) protein (205aa)
30S ribosomal protein S4 n=3 Tax=Acidiphilium RepID=RS4_ACICJ rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 rbh
SCNpilot_expt_500_p_scaffold_673_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14772..15392
DNA (621bp) protein (207aa)
Uncharacterized protein n=5 Tax=Legionella pneumophila RepID=Q5X184_LEGPA
Uncharacterized protein {ECO:0000313|EMBL:AIL13248.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_673_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15612..16532
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ANK2_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:AIL13247.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
conserved membrane protein of unknown function
SCNpilot_expt_500_p_scaffold_673_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16534..17979
DNA (1446bp) protein (482aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] rbh
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B67C1B
SCNpilot_expt_500_p_scaffold_673_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18043..19314
DNA (1272bp) protein (424aa)
AarF domain-containing kinase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JF13_9PROT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIL13245.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ABC1 family protein
SCNpilot_expt_500_p_scaffold_673_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19344..19910)
DNA (567bp) protein (189aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13244.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_673_20
unknown

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20038..22026
DNA (1989bp) protein (663aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_673_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22071..23591)
DNA (1521bp) protein (507aa)
hypothetical protein n=1 Tax=Legionella shakespearei RepID=UPI0003637741 rbh
ATPase AAA {ECO:0000313|EMBL:AIL13243.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
tlcA-A; ADP,ATP carrier protein 1; K03301 ATP:ADP antiporter, AAA family
SCNpilot_expt_500_p_scaffold_673_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23812..24576)
DNA (765bp) protein (255aa)
Chemotaxis protein CheY {ECO:0000313|EMBL:AIL13242.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Two-component response regulator id=4937313 bin=GWC2_Alphaproteobacteria_42_16 species=Micavibrio aeruginosavorus genus=Micavibrio taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
ctrA; two-component cell cycle transcriptional regulator ctrA
SCNpilot_expt_500_p_scaffold_673_23
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24746..25534)
DNA (789bp) protein (263aa)
Tol-pal system protein YbgF, putative n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IX64_POLGS
Uncharacterized protein {ECO:0000313|EMBL:EWY38944.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Tol-pal system protein YbgF
SCNpilot_expt_500_p_scaffold_673_24
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25619..26263
DNA (645bp) protein (215aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Endonuclease III n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AG25_AZOBR
nth; DNA-(apurinic or apyrimidinic site) lyase
SCNpilot_expt_500_p_scaffold_673_25
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26267..26821)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FN76_PHAMO
Uncharacterized protein {ECO:0000313|EMBL:CCG39814.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_673_26
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26821..27300)
DNA (480bp) protein (160aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13239.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ABC transporter substrate binding protein, putative id=4794836 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
putative ABC transporter involved in resistance to organic solvents, periplasmic component
SCNpilot_expt_500_p_scaffold_673_27
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27340..28611)
DNA (1272bp) protein (424aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13238.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_673_28
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28791..29141)
DNA (351bp) protein (117aa)
NADH dehydrogenase (EC:1.6.5.3 1.6.99.3); K00356 NADH dehydrogenase [EC:1.6.99.3]
NADH:ubiquinone oxidoreductase subunit, putative {ECO:0000313|EMBL:ACI98351.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ACI98351.1};; EC=1.6.99.3 {ECO:0000313|EMBL:ACI98351.1};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
NADH:ubiquinone oxidoreductase subunit, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ISB5_RHOCS
SCNpilot_expt_500_p_scaffold_673_29
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29224..29574
DNA (351bp) protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13237.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_673_30
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29541..30029
DNA (489bp) protein (163aa)
ribose 5-phosphate isomerase B family protein; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
Ribose-5-phosphate isomerase B n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0B1_9PROT
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:AIL13236.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Displaying items 1-30 of 37 in total

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