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SCNpilot_expt_1000_bf_scaffold_2747

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2747_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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139..888
DNA (750bp) protein (250aa)
Putative short-chain type dehydrogenase/reductase y4eL {ECO:0000313|EMBL:EYR79260.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYR79260.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative short-chain type dehydrogenase/reductase y4eL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXH7_9RHIZ rbh
putative short-chain type dehydrogenase/reductase y4eL rbh
SCNpilot_expt_1000_bf_scaffold_2747_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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881..1621
DNA (741bp) protein (247aa)
Putative short-chain type dehydrogenase/reductase y4eK {ECO:0000313|EMBL:EYR79259.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR79259.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative short-chain type dehydrogenase/reductase y4eK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0P1_9RHIZ rbh
putative short-chain type dehydrogenase/reductase y4eK rbh
SCNpilot_expt_1000_bf_scaffold_2747_3
unknown

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1697..1897
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2747_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1901..2689
DNA (789bp) protein (263aa)
proC1; pyrroline-5-carboxylate reductase ProC (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase ProC {ECO:0000313|EMBL:AFL51153.1}; EC=1.5.1.2 {ECO:0000313|EMBL:AFL51153.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Pyrroline-5-carboxylate reductase ProC n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X5J7_RHIFR
SCNpilot_expt_1000_bf_scaffold_2747_5
unknown

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2807..2989
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2747_6
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3748..4173
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037692B2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR63188.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2747_7
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4354..5817
DNA (1464bp) protein (488aa)
PAS sensor protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00036AE28B rbh
Diguanylate cyclase (GGDEF) domain-containing protein rbh
PAS/PAC domain protein {ECO:0000313|EMBL:KIV66806.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
SCNpilot_expt_1000_bf_scaffold_2747_8
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5925..6947)
DNA (1023bp) protein (341aa)
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase n=1 Tax=Rhizobium sp. CF122 RepID=J2IVI0_9RHIZ rbh
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase {ECO:0000313|EMBL:EJL52743.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
luciferase family protein
SCNpilot_expt_1000_bf_scaffold_2747_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7032..7688)
DNA (657bp) protein (219aa)
alpha/beta hydrolase n=1 Tax=Rhizobium meliloti RepID=UPI000316A24E
Uncharacterized protein {ECO:0000313|EMBL:EUB96016.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2747_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7904..8695
DNA (792bp) protein (264aa)
Putative amino acid uptake ABC transporter periplasmic solute-binding protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NVZ5_9RHIZ rbh
Putative amino acid uptake ABC transporter periplasmic solute-binding protein {ECO:0000313|EMBL:EKF41994.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
amino acid uptake ABC transporter substrate-binding protein precursor
SCNpilot_expt_1000_bf_scaffold_2747_11
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8762..10006
DNA (1245bp) protein (415aa)
FAD dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1] rbh
FAD dependent oxidoreductase n=1 Tax=Nitratireductor indicus C115 RepID=K2NRJ2_9RHIZ rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:EKF41990.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_2747_12
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10040..10969
DNA (930bp) protein (310aa)
Transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NVY5_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EKF41989.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2747_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11066..12391
DNA (1326bp) protein (442aa)
ATPase P; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
ATPase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035CF47F
Copper-(Or silver)-translocating P-type ATPase {ECO:0000313|EMBL:EYR81630.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Displaying 13 items

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