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SCNpilot_expt_1000_bf_scaffold_1176

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1176_1
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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336..575
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000379EF4A
flaA; flagella associated protein; K02406 flagellin
Flagella associated protein {ECO:0000313|EMBL:ACM35531.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1176_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

821..1849
DNA (1029bp) protein (343aa)
flagellin n=1 Tax=Rhizobium giardinii RepID=UPI000360C179
Flagellin protein FlaD {ECO:0000313|EMBL:AHK43423.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
flaC3; flagellin C
SCNpilot_expt_1000_bf_scaffold_1176_3
unknown

Not on your lists

2062..2166
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1176_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2163..2795
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B1F6_RHILS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS54675.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1176_5
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2792..4084
DNA (1293bp) protein (431aa)
Chemotaxis protein MotB n=1 Tax=Rhizobium sp. RepID=L0NB00_RHISP rbh
Chemotaxis protein MotB {ECO:0000313|EMBL:CCF17956.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
motB; flagellar motor protein MotB; K02557 chemotaxis protein MotB rbh
SCNpilot_expt_1000_bf_scaffold_1176_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4087..5370
DNA (1284bp) protein (428aa)
Chemotaxis motility protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2KCE5_RHIEC rbh
motC; chemotaxis protein; K10564 chemotaxis protein MotC rbh
Chemotaxis motility protein {ECO:0000313|EMBL:ABC89491.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_1176_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5394..6830
DNA (1437bp) protein (479aa)
Flagellar hook-length control protein FliK n=1 Tax=Rhizobium sp. CF142 RepID=J2AQV1_9RHIZ
Flagellar hook-length control protein FliK {ECO:0000313|EMBL:EJJ25650.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
motD; chemotaxis motility protein; K10565 chemotaxis protein MotD
SCNpilot_expt_1000_bf_scaffold_1176_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6769..7335
DNA (567bp) protein (189aa)
lytic transglycosylase n=1 Tax=Rhizobium phaseoli RepID=UPI0003736BF6
hypothetical protein
Conserved hypothetical exported protein {ECO:0000313|EMBL:CAK06220.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_1176_9
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7494..7925)
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A6F3_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE59970.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_1176_10
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7945..8172
DNA (228bp) protein (76aa)
Flagellar transcriptional regulator ftcR n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PCX6_9RHIZ
Flagellar transcriptional regulator ftcR {ECO:0000313|EMBL:CCM74436.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1176_11
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8300..9598
DNA (1299bp) protein (433aa)
Flagellar hook protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CK68_AGRT5 rbh
flgE; flagellar hook protein FlgE; K02390 flagellar hook protein FlgE rbh
Flagellar hook protein {ECO:0000313|EMBL:AAK86385.1}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
SCNpilot_expt_1000_bf_scaffold_1176_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9630..11057
DNA (1428bp) protein (476aa)
Flagellar hook-associated protein FlgK n=2 Tax=Agrobacterium RepID=F0L6D3_AGRSH rbh
Flagellar hook-associated protein FlgK {ECO:0000313|EMBL:CDN96026.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
flgK; flagellar hook-associated protein FlgK; K02396 flagellar hook-associated protein 1 FlgK rbh
SCNpilot_expt_1000_bf_scaffold_1176_13
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11061..12143
DNA (1083bp) protein (361aa)
Flagellar hook-associated protein FlgL n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8BKQ1_RHIRD rbh
Flagellar hook protein FlgL {ECO:0000313|EMBL:KEQ10765.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
flgL; flagellar hook-associated protein FlgL; K02397 flagellar hook-associated protein 3 FlgL rbh
SCNpilot_expt_1000_bf_scaffold_1176_14
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12181..12528
DNA (348bp) protein (116aa)
Flagellar biosynthesis regulatory protein FlaF n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PDH6_9RHIZ
Flagellar biosynthesis regulatory protein FlaF {ECO:0000313|EMBL:EKF58963.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
flaF; flagellar biosynthesis regulatory protein FlaF; K06602 flagellar protein FlaF
SCNpilot_expt_1000_bf_scaffold_1176_15
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12525..12974
DNA (450bp) protein (150aa)
Probable flagellum biosynthesis repressor protein FlbT n=1 Tax=Rhizobium sp. RepID=L0NB09_RHISP
Probable flagellum biosynthesis repressor protein FlbT {ECO:0000256|HAMAP-Rule:MF_00783, ECO:0000313|EMBL:CCF17966.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
flbT; flagellar biosynthesis repressor FlbT
SCNpilot_expt_1000_bf_scaffold_1176_16
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12965..13480
DNA (516bp) protein (172aa)
Flagellar basal body rod modification protein n=2 Tax=Agrobacterium RepID=F0L6D7_AGRSH
Flagellar basal body rod modification protein FlgD {ECO:0000313|EMBL:KJF66860.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
flgD; flagellar basal body rod modification protein; K02389 flagellar basal-body rod modification protein FlgD
SCNpilot_expt_1000_bf_scaffold_1176_17
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13699..13965
DNA (267bp) protein (89aa)
Flagellar biosynthetic protein FliQ n=1 Tax=Rhizobium sp. CF080 RepID=J3CG49_9RHIZ
fliQ; flagellar biosynthesis protein FliQ; K02420 flagellar biosynthetic protein FliQ
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:CDN46399.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_1176_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14133..16220
DNA (2088bp) protein (696aa)
Putative flagellar biosynthesis protein FlhA n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MLC4_RHIL3 rbh
Putative flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:CAK06229.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
flhA; flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA rbh
SCNpilot_expt_1000_bf_scaffold_1176_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16217..16969
DNA (753bp) protein (251aa)
Flagellar biosynthetic protein FliR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EES4_9RHIZ
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fliR; flagellar biosynthesis protein; K02421 flagellar biosynthetic protein FliR rbh
SCNpilot_expt_1000_bf_scaffold_1176_20
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17002..17421
DNA (420bp) protein (140aa)
Putative FliR/FliJ-like chaperone n=1 Tax=Rhizobium sp. RepID=L0NB14_RHISP
Uncharacterized protein {ECO:0000313|EMBL:KEQ09408.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1176_21
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17454..18011
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFY8_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB70102.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1176_22
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18008..18391
DNA (384bp) protein (128aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J998_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAJ94967.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_1176_23
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18391..18930
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CJH4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUC00267.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
conserved exported protein of unknown function
SCNpilot_expt_1000_bf_scaffold_1176_24
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19252..20136
DNA (885bp) protein (295aa)
N-acetyl mannosamine transferase n=1 Tax=Rhizobium mongolense RepID=UPI0003B69272
WecB/TagA/CpsF family glycosyltransferase protein {ECO:0000313|EMBL:AJD40113.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
cpsF; N-acetyl mannosamine transferase
SCNpilot_expt_1000_bf_scaffold_1176_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20188..22161
DNA (1974bp) protein (658aa)
succinoglycan biosynthesis protein ExoP n=1 Tax=Rhizobium gallicum RepID=UPI00038123A7
succinoglycan biosynthesis transporter
Putative succinoglycan biosynthesis transport protein {ECO:0000313|EMBL:ACI53651.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_1176_26
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22288..23187
DNA (900bp) protein (300aa)
Bifunctional protein FolD n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFZ3_RHITR rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
bifunctional protein FolD rbh
SCNpilot_expt_1000_bf_scaffold_1176_27
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23223..24245)
DNA (1023bp) protein (341aa)
HTH-type transcriptional regulator aglR n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PKJ7_9RHIZ
HTH-type transcriptional regulator aglR {ECO:0000313|EMBL:CCM74453.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
aglR; LacI family transcription regulator AglR
SCNpilot_expt_1000_bf_scaffold_1176_28
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24557..25918
DNA (1362bp) protein (454aa)
Alpha-glucoside ABC transporter, substrate-binding protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PPQ7_RHIE6
aglE; alpha-glucoside ABC transporter substrate-binding protein; K10232 alpha-glucoside transport system substrate-binding protein
Alpha-glucoside ABC transporter, substrate-binding protein {ECO:0000313|EMBL:ACE89764.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_1176_29
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26178..27191
DNA (1014bp) protein (338aa)
Alpha-glucoside ABC transporter, permease n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HP47_9RHIZ rbh
Alpha-glucoside ABC transporter, permease {ECO:0000313|EMBL:EPE99750.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
ABC transporter permease; K10233 alpha-glucoside transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1176_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27193..28356
DNA (1164bp) protein (388aa)
alpha-glucoside ABC transporter permease n=1 Tax=Rhizobium radiobacter RepID=UPI0003710517 rbh
Alpha-glucoside ABC transporter permease {ECO:0000313|EMBL:EPR08803.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
aglG; ABC transporter membrane spanning protein; K10234 alpha-glucoside transport system permease protein rbh
Displaying items 1-30 of 74 in total

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