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SCNpilot_expt_1000_bf_scaffold_3496

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3496_1
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..941
DNA (939bp) protein (313aa)
Putative acyl-CoA thiolase {ECO:0000313|EMBL:CCM74333.1}; EC=2.3.1.16 {ECO:0000313|EMBL:CCM74333.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
fadA; acetyl-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
3-ketoacyl-CoA thiolase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036D52A6
SCNpilot_expt_1000_bf_scaffold_3496_2
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1127..3340
DNA (2214bp) protein (738aa)
Putative bifunctional anaerobic fatty acid oxidation complex protein (FadJ/fadB-like): enoyl-CoA hydratase/epimerase/isomerase (N-terminal) 3-hydroxyacyl-CoA dehydrogenase (C-terminal) {ECO:0000313|EMBL:CCF17846.1}; EC=1.1.1.35 {ECO:0000313|EMBL:CCF17846.1};; EC=4.2.1.17 {ECO:0000313|EMBL:CCF17846.1};; EC=5.3.3.8 {ECO:0000313|EMBL:CCF17846.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
fadB; putative fatty oxidation complex alpha subunit; K01782 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] rbh
Putative bifunctional anaerobic fatty acid oxidation complex protein (FadJ/fadB-like): enoyl-CoA hydratase/epimerase/isomerase (N-terminal) 3-hydroxyacyl-CoA dehydrogenase (C-terminal) n=1 Tax=Rhizobium sp. RepID=L0NAR5_RHISP rbh
SCNpilot_expt_1000_bf_scaffold_3496_3
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3578..4066)
DNA (489bp) protein (163aa)
Cytosine deaminase {ECO:0000313|EMBL:KJC44968.1}; EC=3.5.4.1 {ECO:0000313|EMBL:KJC44968.1};; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
Cytosine deaminase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXD3_RHITR
cytosine deaminase
SCNpilot_expt_1000_bf_scaffold_3496_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4128..4625)
DNA (498bp) protein (166aa)
Cytosine deaminase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXD3_RHITR
cytosine deaminase
Cytosine deaminase {ECO:0000313|EMBL:AGB74819.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_3496_5
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4951..5844
DNA (894bp) protein (298aa)
Tartronate semialdehyde reductase (TSAR) n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AF12_RHIFH rbh
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:KJB94799.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
mmsb3; tartronate semialdehyde reductase (TSAR) rbh
SCNpilot_expt_1000_bf_scaffold_3496_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5959..8058
DNA (2100bp) protein (700aa)
deaD; cold-shock DEAD-box protein A; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
helicase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037D7D64
DEAD/DEAH box protein, ATP-dependent RNA helicase {ECO:0000313|EMBL:AHK43236.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_3496_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8164..10680)
DNA (2517bp) protein (839aa)
Na+/proline symporter n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9X639_RHILT
Na+/proline symporter {ECO:0000313|EMBL:EJB04301.1}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
multi-sensor hybrid histidine kinase
SCNpilot_expt_1000_bf_scaffold_3496_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10662..11654)
DNA (993bp) protein (331aa)
Na+/proline symporter n=1 Tax=Rhizobium sp. CF142 RepID=J1T6M2_9RHIZ
Na+/proline symporter {ECO:0000313|EMBL:EJJ27336.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
PAS/PAC sensor hybrid histidine kinase
SCNpilot_expt_1000_bf_scaffold_3496_9
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11850..12113
DNA (264bp) protein (88aa)
Large-conductance mechanosensitive channel n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F954_9RHIZ
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
mscL; large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_3496_10
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12110..12265
DNA (156bp) protein (52aa)
Large-conductance mechanosensitive channel n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q9R7_9RHIZ
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
mscL; mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_3496_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12396..13562
DNA (1167bp) protein (389aa)
Aspartate aminotransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LH46_RHITR
aspartate aminotransferase
Aspartate aminotransferase {ECO:0000313|EMBL:AGB70031.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_3496_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13745..14779
DNA (1035bp) protein (345aa)
galE; UDP-glucose 4-epimerase (EC:5.1.3.2); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] rbh
UDP-glucose-4-epimerase n=1 Tax=Rhizobium sp. CF080 RepID=J3C3L7_9RHIZ rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:KGD86343.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_3496_13
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14967..15749
DNA (783bp) protein (261aa)
rfbF; glucose-1-phosphate cytidylyltransferase; K00978 glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] rbh
glucose-1-phosphate cytidylyltransferase n=1 Tax=Rhizobium giardinii RepID=UPI00037C1F2F rbh
Glucose-1-phosphate cytidylyltransferase {ECO:0000313|EMBL:ACM35446.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_3496_14
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15751..16830
DNA (1080bp) protein (360aa)
rfbG; CDP-glucose 4,6-dehydratase; K01709 CDP-glucose 4,6-dehydratase [EC:4.2.1.45] rbh
CDP-glucose 4,6-dehydratase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JR34_AGRVS rbh
CDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:ACM35447.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_3496_15
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16827..17387
DNA (561bp) protein (187aa)
rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JR35_AGRVS
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ACM35448.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_3496_16
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17384..18610
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JR36_AGRVS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM35449.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_3496_17
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18868..19632)
DNA (765bp) protein (255aa)
Cephalosporin hydroxylase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JC12_9PROT rbh
Cephalosporin hydroxylase {ECO:0000313|EMBL:EKE68134.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
cephalosporin hydroxylase rbh
SCNpilot_expt_1000_bf_scaffold_3496_18
Thermosynechococcus sp. NK55a, Thermosynechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(19632..19967)
DNA (336bp) protein (112aa)
S-adenosylmethionine-dependent methyltransferase n=1 Tax=Thermosynechococcus sp. NK55 RepID=V5V7J9_9CHRO
S-adenosylmethionine-dependent methyltransferase {ECO:0000313|EMBL:AHB89370.1}; TaxID=1394889 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Thermosynechococcus.;" source="Thermosynechococcus sp. NK55a.;"
ndp-hexose methyltransferase
SCNpilot_expt_1000_bf_scaffold_3496_19
Thermosynechococcus sp. NK55a, Thermosynechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(20754..21671)
DNA (918bp) protein (306aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:AHB89369.1}; EC=5.1.3.2 {ECO:0000313|EMBL:AHB89369.1};; TaxID=1394889 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Thermosynechococcus.;" source="Thermosynechococcus sp. NK55a.;"
UDP-glucose 4-epimerase n=1 Tax=Thermosynechococcus sp. NK55 RepID=V5V718_9CHRO rbh
nucleoside-diphosphate-sugar epimerase rbh
SCNpilot_expt_1000_bf_scaffold_3496_20
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21668..22837)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036E315D rbh
Uncharacterized protein {ECO:0000313|EMBL:KGF70489.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_3496_21
unknown

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comp(23152..24564)
DNA (1413bp) protein (471aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3496_22
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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24866..25090
DNA (225bp) protein (75aa)
Diguanylate cyclase (Fragment) n=1 Tax=Rhizobium sp. Pop5 RepID=K0VYP5_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:EJZ22465.1}; Flags: Fragment;; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
sensory box/GGDEF family protein
SCNpilot_expt_1000_bf_scaffold_3496_23
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25100..26158)
DNA (1059bp) protein (353aa)
putative dipeptidase; K01273 membrane dipeptidase [EC:3.4.13.19] rbh
peptidase n=1 Tax=Rhizobium giardinii RepID=UPI00036837CE rbh
Zn-dependent dipeptidase, microsomal dipeptidase {ECO:0000313|EMBL:EJJ25738.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_3496_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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26470..26883
DNA (414bp) protein (138aa)
BA14K-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXI1_9RHIZ
BA14K-like protein {ECO:0000313|EMBL:EYR80286.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
BA14K family protein
SCNpilot_expt_1000_bf_scaffold_3496_25
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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27123..27533
DNA (411bp) protein (137aa)
transposase n=2 Tax=Rhizobium leguminosarum RepID=UPI00036733A7
Putative transposase-related protein {ECO:0000313|EMBL:EGE58345.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
putative transposase-related protein; K07483 transposase
SCNpilot_expt_1000_bf_scaffold_3496_26
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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27530..27925
DNA (396bp) protein (132aa)
hypothetical protein n=2 Tax=Bacteria RepID=UPI0003731CEE
IS66 Orf2 family protein {ECO:0000313|EMBL:EJZ16784.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
IS66 Orf2 family protein; K07484 transposase
SCNpilot_expt_1000_bf_scaffold_3496_27
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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27922..29580
DNA (1659bp) protein (553aa)
Transposase IS66 n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B4W6_RHILS rbh
transposase IS66 rbh
Transposase {ECO:0000313|EMBL:EJC64823.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_expt_1000_bf_scaffold_3496_28
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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29577..29975
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NLP2_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF21824.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
Displaying 28 items

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