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SCNpilot_expt_1000_bf_scaffold_4184

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4184_1
unknown

Not on your lists

comp(2..85)
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4184_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(347..2995)
DNA (2649bp) protein (883aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
acnA; aconitate hydratase 1 (EC:4.2.1.3) rbh
Aconitate hydratase 1 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F2J6_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4184_3
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3313..3960
DNA (648bp) protein (216aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
ccmA; cytochrome c biogenesis protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41] rbh
cytochrome C biogenesis protein CcmA n=1 Tax=Rhizobium leguminosarum RepID=UPI00037ED381 rbh
SCNpilot_expt_1000_bf_scaffold_4184_4
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3836..4549)
DNA (714bp) protein (238aa)
UPI0003CE6B9A related cluster n=2 Tax=unknown RepID=UPI0003CE6B9A
Uncharacterized protein {ECO:0000313|EMBL:ESX55868.1}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
SCNpilot_expt_1000_bf_scaffold_4184_5
unknown

Not on your lists

4767..4862
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4184_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4908..5669
DNA (762bp) protein (254aa)
Heme exporter protein C n=1 Tax=Rhizobium leguminosarum RepID=UPI00038090A4 rbh
Cytochrome-c heme transporter protein CcmC {ECO:0000313|EMBL:AJC81467.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
heme exporter protein CcmC; K02195 heme exporter protein C rbh
SCNpilot_expt_1000_bf_scaffold_4184_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5808..6398
DNA (591bp) protein (197aa)
Periplasmic protein thiol/disulfide oxidoreductase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QZW5_9RHIZ
Periplasmic protein thiol:disulfide oxidoreductase {ECO:0000313|EMBL:AHK42736.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
periplasmic protein thiol/disulfide oxidoreductase; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
SCNpilot_expt_1000_bf_scaffold_4184_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6400..6993)
DNA (594bp) protein (198aa)
membrane protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037A9908 rbh
hypothetical protein rbh
UPF0314 protein Rleg9DRAFT_3979 {ECO:0000256|HAMAP-Rule:MF_01514}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_4184_9
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6990..7667)
DNA (678bp) protein (226aa)
Probable intracellular septation protein A n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UAW1_9RHIZ rbh
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ispZ; intracellular septation protein A rbh
SCNpilot_expt_1000_bf_scaffold_4184_10
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7786..9330)
DNA (1545bp) protein (515aa)
Signal recognition particle receptor FtsY n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HCG3_9RHIZ rbh
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor rbh
SCNpilot_expt_1000_bf_scaffold_4184_11
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9346..10620)
DNA (1275bp) protein (425aa)
MiaB-like tRNA modifying enzyme n=1 Tax=Rhizobium sp. AP16 RepID=J2LAQ7_9RHIZ
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:EJK84516.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4184_12
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10617..11522)
DNA (906bp) protein (302aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] rbh
Diaminopimelate epimerase n=1 Tax=Rhizobium sp. CF122 RepID=J2ICX0_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4184_13
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11878..13434
DNA (1557bp) protein (519aa)
Signal recognition particle protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JCL7_AGRRK rbh
ffh; signal recognition particle GTP-binding protein; K03106 signal recognition particle subunit SRP54 rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_4184_14
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13453..13770
DNA (318bp) protein (106aa)
Chorismate mutase {ECO:0000313|EMBL:EKF61185.1}; EC=5.4.99.5 {ECO:0000313|EMBL:EKF61185.1};; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
chorismate mutase; K04092 chorismate mutase [EC:5.4.99.5]
Chorismate mutase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q7G8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4184_15
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13806..14171
DNA (366bp) protein (122aa)
30S ribosomal protein S16 n=2 Tax=Rhizobium/Agrobacterium group RepID=RS16_AGRRK
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_4184_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14292..14840
DNA (549bp) protein (183aa)
Ribosome maturation factor RimM n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LRM9_RHITR rbh
rimM; 16S rRNA processing protein RimM rbh
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4184_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14837..15553
DNA (717bp) protein (239aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
trmD; tRNA (guanine-N1)-methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] rbh
tRNA (guanine-N1)-methyltransferase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037888C2 rbh
SCNpilot_expt_1000_bf_scaffold_4184_18
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15726..16253
DNA (528bp) protein (176aa)
50S ribosomal protein L19 n=1 Tax=Rhizobium sp. CF080 RepID=J2IL55_9RHIZ
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
SCNpilot_expt_1000_bf_scaffold_4184_19
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16365..16964)
DNA (600bp) protein (200aa)
N-acetylmuramoyl-L-alanine amidase family 2 n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7KW07_METC4
N-acetylmuramoyl-L-alanine amidase family 2
N-acetylmuramoyl-L-alanine amidase family 2 {ECO:0000313|EMBL:ACK82823.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_expt_1000_bf_scaffold_4184_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16964..18385)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PKL6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS40070.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
caspase-1, p20
SCNpilot_expt_1000_bf_scaffold_4184_21
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18525..19322
DNA (798bp) protein (266aa)
amino acid ABC transporter n=1 Tax=Rhizobium mongolense RepID=UPI0003B3F2A3 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJD43177.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
solute-binding component of ABC transporter; K02030 polar amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4184_22
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19360..20178
DNA (819bp) protein (273aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q0K4_9RHIZ rbh
Putative amino acid ABC transporter, permease protein {ECO:0000313|EMBL:CDM59629.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
polar amino acid ABC transcriptional regulator inner membrane protein; K02029 polar amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_4184_23
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20463..21053
DNA (591bp) protein (197aa)
leuC; 3-isopropylmalate dehydratase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase large subunit {ECO:0000255|HAMAP-Rule:MF_01026}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01026};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01026}; Short=IPMI {ECO:0000255|HAMAP-Rule:MF_01026};; Isopropylmalate isomerase {ECO:0000255|HAMAP-Rule:MF_01026}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Rhizobium sp. (strain NGR234) RepID=LEUC_RHISN
Displaying 23 items

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