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scnpilot_solids1_trim150_scaffold_1780_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1780_curated_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(151..792)
DNA (642bp) protein (214aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS00010155}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS00010150};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN54_9GAMM
ubiquinone biosynthesis protein COQ7
scnpilot_solids1_trim150_scaffold_1780_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1046..1474
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=Rhodanobacter denitrificans RepID=I4WW05_9GAMM
LSU ribosomal protein L13P
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1780_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1479..1877
DNA (399bp) protein (133aa)
30S ribosomal protein S9 n=1 Tax=Rhodanobacter denitrificans RepID=M4NHR5_9GAMM
ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1780_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2162..4132
DNA (1971bp) protein (657aa)
Chloride channel n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN51_9GAMM
Chloride channel {ECO:0000313|EMBL:EIM00893.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chloride channel protein EriC
scnpilot_solids1_trim150_scaffold_1780_curated_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4174..4815)
DNA (642bp) protein (214aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase A n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN50_9GAMM
scnpilot_solids1_trim150_scaffold_1780_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4902..5354)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN49_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00891.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1780_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5351..5971)
DNA (621bp) protein (207aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN48_9GAMM
5,10-methenyltetrahydrofolate synthetase
scnpilot_solids1_trim150_scaffold_1780_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6302..6610)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ9_9GAMM
hypothetical protein
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1780_curated_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6619..6858)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN46_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00888.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
TIGR02449 family protein
scnpilot_solids1_trim150_scaffold_1780_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6956..7519
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NK26_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90437.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1780_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7516..8856
DNA (1341bp) protein (447aa)
aminopeptidase P (EC:3.4.11.9)
Aminopeptidase P {ECO:0000313|EMBL:AGG90436.1}; EC=3.4.11.9 {ECO:0000313|EMBL:AGG90436.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Aminopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ6_9GAMM
scnpilot_solids1_trim150_scaffold_1780_curated_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8853..8993)
DNA (141bp) protein (47aa)
Cyd operon protein YbgT n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ5_9GAMM
cyd operon protein YbgT
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1780_curated_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9009..10139)
DNA (1131bp) protein (377aa)
cytochrome d oxidase cyd, subunit II (EC:1.10.3.-)
Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN42_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1780_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10150..11721)
DNA (1572bp) protein (524aa)
cytochrome bd-type quinol oxidase, subunit 1 (EC:1.10.3.-)
Cytochrome bd-type quinol oxidase, subunit 1 {ECO:0000313|EMBL:AGG90433.1}; EC=1.10.3.- {ECO:0000313|EMBL:AGG90433.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Cytochrome bd-type quinol oxidase, subunit 1 n=1 Tax=Rhodanobacter denitrificans RepID=M4NL90_9GAMM
scnpilot_solids1_trim150_scaffold_1780_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11718..11948)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90432.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1780_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12139..13455)
DNA (1317bp) protein (439aa)
Xaa-Pro dipeptidase (EC:3.4.13.9)
Xaa-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582}; Short=X-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279};; EC=3.4.13.9 {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582};; Imidodipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; Proline dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Xaa-Pro dipeptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ1_9GAMM
scnpilot_solids1_trim150_scaffold_1780_curated_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13633..13980)
DNA (348bp) protein (116aa)
PilZ domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ0_9GAMM
PilZ domain-containing protein
PilZ domain-containing protein {ECO:0000313|EMBL:AGG90430.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1780_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13977..16259)
DNA (2283bp) protein (761aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHQ1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AGG90429.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Protein of unknown function (DUF1631)
scnpilot_solids1_trim150_scaffold_1780_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16349..17515)
DNA (1167bp) protein (389aa)
HemN family oxidoreductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVY8_9GAMM
putative oxygen-independent coproporphyrinogen III oxidase
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:AGG90428.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1780_curated_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17512..18114)
DNA (603bp) protein (201aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae
Non-canonical purine NTP pyrophosphatase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNI8_9GAMM
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
scnpilot_solids1_trim150_scaffold_1780_curated_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18137..18865)
DNA (729bp) protein (243aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RNAse PH (EC:2.7.7.56)
Ribonuclease PH n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNI7_9GAMM
scnpilot_solids1_trim150_scaffold_1780_curated_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18973..19833
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93611.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
TIGR00255 family protein
scnpilot_solids1_trim150_scaffold_1780_curated_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19830..20456
DNA (627bp) protein (209aa)
guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Guanylate kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVY4_9GAMM
scnpilot_solids1_trim150_scaffold_1780_curated_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20607..21443
DNA (837bp) protein (279aa)
ABC-type transport system involved in resistance to organic solvents, ATPase component n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNI3_9GAMM
ABC-type transport system involved in resistance to organic solvents, ATPase component {ECO:0000313|EMBL:EIM01025.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC-type transport system involved in resistance to organic solvents, ATPase component
scnpilot_solids1_trim150_scaffold_1780_curated_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21440..21682
DNA (243bp) protein (81aa)
Conserved hypothetical integral membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVY2_9GAMM
hypothetical protein
Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AGG90422.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 25 items

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