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scnpilot_solids1_trim150_scaffold_1135_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1135_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..260
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDS3_9GAMM
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88920.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1135_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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379..1080
DNA (702bp) protein (234aa)
Pirin-related protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NMJ7_9GAMM
Pirin-related protein
Pirin-related protein {ECO:0000313|EMBL:AGG88921.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1135_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1223..2299
DNA (1077bp) protein (359aa)
O-6-methylguanine DNA methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NFS8_9GAMM
O-6-methylguanine DNA methyltransferase
O-6-methylguanine DNA methyltransferase {ECO:0000313|EMBL:AGG88922.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1135_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2296..3027
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXL0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88923.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1135_curated_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3024..3677
DNA (654bp) protein (218aa)
Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIB2_9GAMM
Alpha-ketoglutarate-dependent dioxygenase AlkB {ECO:0000313|EMBL:EIL99203.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
alkylated DNA repair protein
scnpilot_solids1_trim150_scaffold_1135_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3667..4305
DNA (639bp) protein (213aa)
DNA-3-methyladenine glycosylase II n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIB1_9GAMM
DNA-3-methyladenine glycosylase II {ECO:0000313|EMBL:EIL99202.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
HhH-GPD superfamily base excision DNA repair protein
scnpilot_solids1_trim150_scaffold_1135_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4286..4711)
DNA (426bp) protein (142aa)
Putative membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NMK3_9GAMM
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGG88926.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1135_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4721..5062)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFT1_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88927.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1135_curated_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5237..6160
DNA (924bp) protein (308aa)
Beta-lactamase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6X3_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EIL95214.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Zn-dependent hydrolase, glyoxylase
scnpilot_solids1_trim150_scaffold_1135_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6176..7051)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99199.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Zn-dependent hydrolase, glyoxylase
scnpilot_solids1_trim150_scaffold_1135_curated_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7153..7500)
DNA (348bp) protein (116aa)
tRNA-binding protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA7_9GAMM
tRNA-binding protein {ECO:0000313|EMBL:EIL99198.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
EMAP domain-containing protein
scnpilot_solids1_trim150_scaffold_1135_curated_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7497..8786)
DNA (1290bp) protein (430aa)
FAD dependent oxidoreductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA6_9GAMM
FAD dependent oxidoreductase {ECO:0000313|EMBL:EIL99197.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycine/D-amino acid oxidase, deaminating
scnpilot_solids1_trim150_scaffold_1135_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8865..9740)
DNA (876bp) protein (292aa)
UDP-glucose pyrophosphorylase (EC:2.7.7.9)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
UDP-glucose pyrophosphorylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXK1_9GAMM
scnpilot_solids1_trim150_scaffold_1135_curated_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9737..11635)
DNA (1899bp) protein (633aa)
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA4_9GAMM
Putative nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:EIL99195.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative nucleoside-diphosphate sugar epimerase
scnpilot_solids1_trim150_scaffold_1135_curated_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11622..12644)
DNA (1023bp) protein (341aa)
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA3_9GAMM
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase {ECO:0000313|EMBL:EIL99194.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
scnpilot_solids1_trim150_scaffold_1135_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12680..13852)
DNA (1173bp) protein (391aa)
Putative N-acetylglucosaminyl transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDU0_9GAMM
putative N-acetylglucosaminyl transferase
Lipopolysaccharide assembly protein B {ECO:0000256|HAMAP-Rule:MF_00994}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1135_curated_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13849..14097)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXJ7_9GAMM
Protein of unknown function (DUF1049)
Uncharacterized protein {ECO:0000313|EMBL:AGG88936.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1135_curated_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14266..14565)
DNA (300bp) protein (100aa)
Integration host factor subunit beta n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIA0_9GAMM
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
integration host factor, beta subunit
scnpilot_solids1_trim150_scaffold_1135_curated_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14644..15840)
DNA (1197bp) protein (399aa)
30S ribosomal protein S1 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI99_9GAMM
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SSU ribosomal protein S1P
Displaying 19 items

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