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scnpilot_solids1_trim150_scaffold_526_curated

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_526_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..321
DNA (321bp) protein (107aa)
RNA polymerase sigma factor RpoD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXS1_9GAMM
RNA polymerase, sigma 70 subunit, RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_526_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

498..791
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX42_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87404.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_526_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(784..1341)
DNA (558bp) protein (186aa)
Acetyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND83_9GAMM
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AGG87403.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_526_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1338..1871)
DNA (534bp) protein (178aa)
Microcystin-dependent protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX40_9GAMM
microcystin-dependent protein
Microcystin-dependent protein {ECO:0000313|EMBL:AGG87402.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_526_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1903..2433)
DNA (531bp) protein (177aa)
Tail Collar domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX39_9GAMM
microcystin-dependent protein
Microcystin-dependent protein {ECO:0000313|EMBL:AGG87401.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_526_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2448..2948)
DNA (501bp) protein (167aa)
Microcystin-dependent protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NAB8_9GAMM
microcystin-dependent protein
Microcystin-dependent protein {ECO:0000313|EMBL:AGG87400.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_526_curated_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3235..9405
DNA (6171bp) protein (2057aa)
Putative autotransporter protein,putative Ig domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NAC7_9GAMM
putative autotransporter protein,putative Ig domain-containing protein
Outer membrane autotransporter barrel domain-containing protein {ECO:0000313|EMBL:EIL87785.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_526_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9766..10779)
DNA (1014bp) protein (338aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5N2_9GAMM
translation factor SUA5; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
scnpilot_solids1_trim150_scaffold_526_curated_9
Chloroflexus sp. Y-400-fl, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(10776..13292)
DNA (2517bp) protein (839aa)
UPF0753 protein Caur_1777 n=2 Tax=Chloroflexus RepID=Y1777_CHLAA
hypothetical protein; K09822 hypothetical protein
UPF0753 protein Chy400_1924 {ECO:0000255|HAMAP-Rule:MF_01871}; TaxID=480224 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl).;"
scnpilot_solids1_trim150_scaffold_526_curated_10
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13305..14891)
DNA (1587bp) protein (529aa)
ndhF; NADH dehydrogenase I subunit 5; K05577 NAD(P)H-quinone oxidoreductase subunit 5 [EC:1.6.5.3]
NADH dehydrogenase I subunit 5 n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3I8_AZOS1
NADH dehydrogenase I subunit 5 {ECO:0000313|EMBL:BAI74727.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
scnpilot_solids1_trim150_scaffold_526_curated_11
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14995..15891
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003453F34
LysR family transcriptional regulator; K03717 LysR family transcriptional regulator, transcriptional activator of nhaA
DNA-binding transcriptional activator {ECO:0000313|EMBL:CDF61811.1}; TaxID=366649 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscans subsp. fuscans.;"
scnpilot_solids1_trim150_scaffold_526_curated_12
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16715..17218)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida CSV86 RepID=L1LZA9_PSEPU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
scnpilot_solids1_trim150_scaffold_526_curated_13
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17398..17781)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00036C25E5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC47038.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
scnpilot_solids1_trim150_scaffold_526_curated_14
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17771..21226)
DNA (3456bp) protein (1152aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000345A164
Uncharacterized protein {ECO:0000313|EMBL:AGC47037.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_526_curated_15
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21223..23253)
DNA (2031bp) protein (677aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A5DC4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC47036.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
scnpilot_solids1_trim150_scaffold_526_curated_16
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23255..24553)
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00036DBA5E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC47035.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
scnpilot_solids1_trim150_scaffold_526_curated_17
unknown

Not on your lists

comp(24647..24784)
DNA (138bp) protein (46aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_526_curated_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25456..25650
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHT5_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_526_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25979..27394
DNA (1416bp) protein (472aa)
Deoxyribodipyrimidine photolyase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND67_9GAMM
deoxyribodipyrimidine photolyase
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:AGG87383.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_526_curated_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27481..28593
DNA (1113bp) protein (371aa)
Catalase-related peroxidase {ECO:0000256|PIRNR:PIRNR000296}; EC=1.11.1.- {ECO:0000256|PIRNR:PIRNR000296};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
catalase precursor; K03781 catalase [EC:1.11.1.6]
Catalase-related peroxidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXQ7_9GAMM
scnpilot_solids1_trim150_scaffold_526_curated_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28590..29189
DNA (600bp) protein (200aa)
Cytochrome b561 protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXQ6_9GAMM
Cytochrome b561 protein {ECO:0000313|EMBL:EIL91997.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome B561
scnpilot_solids1_trim150_scaffold_526_curated_22

Not on your lists

29314..29883
DNA (570bp) protein (190aa)
Lipocalin family protein n=1 Tax=mine drainage metagenome RepID=T0ZU49_9ZZZZ
Lipocalin family protein {ECO:0000313|EMBL:EQD33425.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
bacterial lipocalin
scnpilot_solids1_trim150_scaffold_526_curated_23
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29880..30641
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UG82_XANAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBA17393.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
scnpilot_solids1_trim150_scaffold_526_curated_24
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30658..32187
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037E3F1F
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KIA81921.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
hypothetical protein; K06876 deoxyribodipyrimidine photolyase-related protein
scnpilot_solids1_trim150_scaffold_526_curated_25
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32318..33043
DNA (726bp) protein (242aa)
GTP cyclohydrolase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WF45_9GAMM
GTP cyclohydrolase {ECO:0000313|EMBL:EIL98086.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
GTP cyclohydrolase Itype 1
scnpilot_solids1_trim150_scaffold_526_curated_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33062..33730)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WF51_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98092.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_526_curated_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33890..34615)
DNA (726bp) protein (242aa)
Dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WF53_9GAMM
Dehydrogenase {ECO:0000313|EMBL:EIL98094.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
dehydrogenase
scnpilot_solids1_trim150_scaffold_526_curated_28
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34918..35601)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C97F0
Transcriptional regulator {ECO:0000313|EMBL:KGM53691.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
anti-ECFsigma factor, ChrR
scnpilot_solids1_trim150_scaffold_526_curated_29
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35598..36170)
DNA (573bp) protein (191aa)
RNA polymerase sigma factor RpoE n=1 Tax=Rhodanobacter sp. 115 RepID=I4VII6_9GAMM
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:EIL87027.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_solids1_trim150_scaffold_526_curated_30
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36368..37333
DNA (966bp) protein (322aa)
Fatty acid desaturase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VII4_9GAMM
Fatty acid desaturase {ECO:0000313|EMBL:EIL87025.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
fatty-acid desaturase
Displaying items 1-30 of 43 in total

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