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scnpilot_solids1_trim150_scaffold_633_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_633_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..596)
DNA (594bp) protein (198aa)
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAU6_9GAMM
4-hydroxyphenylpyruvate dioxygenase
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:AGG87705.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_633_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

706..1164
DNA (459bp) protein (153aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=M4NAY5_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG87704.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_633_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1243..2754)
DNA (1512bp) protein (504aa)
Amino acid/peptide transporter (Peptide:H symporter) n=1 Tax=Rhodanobacter denitrificans RepID=M4NDZ2_9GAMM
amino acid/peptide transporter (peptide:H symporter)
Amino acid/peptide transporter (Peptide:H symporter) {ECO:0000313|EMBL:AGG87703.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_633_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2903..4411)
DNA (1509bp) protein (503aa)
Amino acid/peptide transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE68_9GAMM
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL97759.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
amino acid/peptide transporter (peptide:H symporter)
scnpilot_solids1_trim150_scaffold_633_curated_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4512..5360)
DNA (849bp) protein (283aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rh
Tryptophan 2,3-dioxygenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE69_9GAMM
tryptophan 2,3-dioxygenase (vermilion)
scnpilot_solids1_trim150_scaffold_633_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5450..6703
DNA (1254bp) protein (418aa)
ABC transporter permease n=1 Tax=Dyella ginsengisoli RepID=UPI0003483D94
Pyruvate dehydrogenase E1 alpha subunit {ECO:0000313|EMBL:EIL92392.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pyruvate dehydrogenase E1 component, alpha subunit
scnpilot_solids1_trim150_scaffold_633_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6707..7687
DNA (981bp) protein (327aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE71_9GAMM
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:EIL97762.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_633_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7806..9152
DNA (1347bp) protein (449aa)
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Dyella ginsengisoli RepID=UPI0003487C31
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component {ECO:0000313|EMBL:AGG87698.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_633_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9349..9999)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMG6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87697.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_633_curated_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9996..10514)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYV7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92398.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative metal-dependent hydrolase
scnpilot_solids1_trim150_scaffold_633_curated_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10572..10955
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE75_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97766.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_633_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10993..12225)
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMG9_9GAMM
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGG87694.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_633_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12342..14570)
DNA (2229bp) protein (743aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMH0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AGG87693.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_633_curated_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14723..15052)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE78_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97769.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_633_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15086..16453)
DNA (1368bp) protein (456aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Tryptophan--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMH2_9GAMM
scnpilot_solids1_trim150_scaffold_633_curated_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16613..16942
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMH3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97771.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein; K09946 hypothetical protein
scnpilot_solids1_trim150_scaffold_633_curated_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16994..18001)
DNA (1008bp) protein (336aa)
arginase (EC:3.5.3.1)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Arginase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMH4_9GAMM
scnpilot_solids1_trim150_scaffold_633_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18168..18626)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMH5_9GAMM
Protein of unknown function (DUF3617)
Uncharacterized protein {ECO:0000313|EMBL:AGG87689.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_633_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19140..19379)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMH6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87688.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_633_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19581..19832)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMH7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87687.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_633_curated_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20112..20789)
DNA (678bp) protein (226aa)
Sporulation domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE84_9GAMM
Sporulation domain-containing protein {ECO:0000313|EMBL:EIL97775.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
sporulation related protein
scnpilot_solids1_trim150_scaffold_633_curated_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20842..21588)
DNA (747bp) protein (249aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Type III pantothenate kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAT3_9GAMM
pantothenate kinase, type III
scnpilot_solids1_trim150_scaffold_633_curated_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21585..22622)
DNA (1038bp) protein (346aa)
Biotin-(Acetyl-CoA-carboxylase) ligase BirA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE86_9GAMM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin operon repressor {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
birA, biotin-(acetyl-CoA-carboxylase) ligase
scnpilot_solids1_trim150_scaffold_633_curated_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22813..23139
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDX8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87683.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_633_curated_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23151..23945
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMI2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87682.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_633_curated_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23953..25392)
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIP1_9GAMM
signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_633_curated_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25340..25783)
DNA (444bp) protein (148aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WMI4_9GAMM
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EIL97781.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Displaying 27 items

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