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scnpilot_solids1_trim150_scaffold_858_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_858_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..1220)
DNA (1218bp) protein (406aa)
Penicillin-binding protein 1C n=1 Tax=Rhodanobacter denitrificans RepID=M4NA97_9GAMM
penicillin-binding protein 1C
Penicillin-binding protein 1C {ECO:0000313|EMBL:AGG87360.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1423..6420)
DNA (4998bp) protein (1666aa)
Large extracellular alpha-helical protein n=1 Tax=Rhodanobacter denitrificans RepID=M4ND44_9GAMM
Large extracellular alpha-helical protein {ECO:0000313|EMBL:AGG87358.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
large extracellular alpha-helical protein
scnpilot_solids1_trim150_scaffold_858_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6522..7400)
DNA (879bp) protein (293aa)
Lysophospholipase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWZ7_9GAMM
lysophospholipase
Lysophospholipase {ECO:0000313|EMBL:AGG87357.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7457..9463)
DNA (2007bp) protein (669aa)
Trypsin-like serine protease with C-terminal PDZ domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WWZ6_9GAMM
Trypsin-like serine protease with C-terminal PDZ domain {ECO:0000313|EMBL:AGG87356.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
trypsin-like serine protease with C-terminal PDZ domain
scnpilot_solids1_trim150_scaffold_858_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9638..11884)
DNA (2247bp) protein (749aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter denitrificans RepID=I4WWZ5_9GAMM
Outer membrane receptor protein {ECO:0000313|EMBL:AGG87355.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
outer membrane receptor protein
scnpilot_solids1_trim150_scaffold_858_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11995..14223)
DNA (2229bp) protein (743aa)
Beta-glucosidase-like glycosyl hydrolase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAA3_9GAMM
Beta-glucosidase-like glycosyl hydrolase {ECO:0000313|EMBL:AGG87354.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
beta-glucosidase-like glycosyl hydrolase
scnpilot_solids1_trim150_scaffold_858_curated_7
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14369..18970
DNA (4602bp) protein (1534aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
DEAD/DEAH box helicase domain-containing protein n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AJ01_BURGB
DEAD/DEAH box helicase domain-containing protein {ECO:0000313|EMBL:ACR31881.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
scnpilot_solids1_trim150_scaffold_858_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19097..20698)
DNA (1602bp) protein (534aa)
Carboxypeptidase C (Cathepsin A) n=1 Tax=Rhodanobacter denitrificans RepID=I4WUY4_9GAMM
Carboxypeptidase C (Cathepsin A) {ECO:0000313|EMBL:AGG87343.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
carboxypeptidase C (cathepsin A)
scnpilot_solids1_trim150_scaffold_858_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20995..22308
DNA (1314bp) protein (438aa)
Sugar-binding glycoside hydrolase family 2 n=1 Tax=Rhodanobacter denitrificans RepID=I4WQH2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87609.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22444..23301)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WET8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97979.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
EamA-like transporter family
scnpilot_solids1_trim150_scaffold_858_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23353..24219)
DNA (867bp) protein (289aa)
Metallo-beta-lactamase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUY2_9GAMM
Zn-dependent hydrolase, glyoxylase
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:AGG87341.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24261..24611)
DNA (351bp) protein (117aa)
ArsR family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WUY1_9GAMM
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGG87340.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24820..26106
DNA (1287bp) protein (429aa)
NADH dehydrogenase, FAD-containing subunit (EC:1.8.5.-)
NADH dehydrogenase, FAD-containing subunit {ECO:0000313|EMBL:AGG87339.1}; EC=1.8.5.- {ECO:0000313|EMBL:AGG87339.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
NADH dehydrogenase, FAD-containing subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WUY0_9GAMM
scnpilot_solids1_trim150_scaffold_858_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26170..26376
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUX9_9GAMM
Protein of unknown function (DUF2892)
Uncharacterized protein {ECO:0000313|EMBL:AGG87338.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26403..26792
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEU3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97984.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_858_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26795..27898
DNA (1104bp) protein (368aa)
RND family efflux transporter MFP subunit n=2 Tax=Rhodanobacter denitrificans RepID=I4WUX7_9GAMM
RND family efflux transporter, MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AGG87336.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27891..31133
DNA (3243bp) protein (1081aa)
Acriflavin resistance protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUX6_9GAMM
Cation/multidrug efflux pump {ECO:0000313|EMBL:AGG87335.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
cation/multidrug efflux pump
scnpilot_solids1_trim150_scaffold_858_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31164..32027)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUX5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87334.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32263..32517
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEU7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97988.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_858_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32593..33051
DNA (459bp) protein (153aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WUX3_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG87332.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33075..34514
DNA (1440bp) protein (480aa)
NodT family efflux transporter outer membrane lipoprotein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUX2_9GAMM
efflux transporter, outer membrane factor lipoprotein, NodT family
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:AGG87331.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34524..35732
DNA (1209bp) protein (403aa)
Multidrug resistance efflux pump n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEV0_9GAMM
Multidrug resistance efflux pump {ECO:0000313|EMBL:EIL97991.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
multidrug resistance efflux pump
scnpilot_solids1_trim150_scaffold_858_curated_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35841..37367
DNA (1527bp) protein (509aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Rhodanobacter denitrificans RepID=M4NA90_9GAMM
drug resistance transporter, EmrB/QacA subfamily
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:AGG87329.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37427..37948)
DNA (522bp) protein (174aa)
Lipid A 3-O-deacylase (PagL) n=1 Tax=Rhodanobacter denitrificans RepID=I4WUW9_9GAMM
Lipid A 3-O-deacylase (PagL)
Lipid A 3-O-deacylase (PagL) {ECO:0000313|EMBL:AGG87328.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38117..39589)
DNA (1473bp) protein (491aa)
Putative Zn-dependent peptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NC29_9GAMM
putative Zn-dependent peptidase
Putative Zn-dependent peptidase {ECO:0000313|EMBL:AGG87327.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39586..40965)
DNA (1380bp) protein (460aa)
Putative Zn-dependent peptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHM1_9GAMM
putative Zn-dependent peptidase
Putative Zn-dependent peptidase {ECO:0000313|EMBL:AGG87326.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_858_curated_27
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41257..44571
DNA (3315bp) protein (1105aa)
Autotransporter subtilase family protease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNT2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGI78053.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
autotransporter-associated beta strand repeat protein
Displaying 27 items

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