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SCN18_26_2_15_R1_F_scaffold_1140

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_F_scaffold_1140_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..149)
DNA (147bp) protein (49aa)
Elongation factor Tu n=3 Tax=Methylobacterium extorquens RepID=A9VYK6_METEP
tuf; elongation factor Tu (EF-Tu)
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCN18_26_2_15_R1_F_scaffold_1140_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(194..2269)
DNA (2076bp) protein (692aa)
Elongation factor G n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWA4_9RHIZ
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
elongation factor G
SCN18_26_2_15_R1_F_scaffold_1140_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2300..2770)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWA3_9RHIZ
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
30S ribosomal protein S7
SCN18_26_2_15_R1_F_scaffold_1140_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2844..3215)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWA2_9RHIZ
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rpsL; 30S ribosomal protein S12
SCN18_26_2_15_R1_F_scaffold_1140_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3643..7827)
DNA (4185bp) protein (1395aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E1FE48
DNA-directed RNA polymerase subunit beta'
SCN18_26_2_15_R1_F_scaffold_1140_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7938..12059)
DNA (4122bp) protein (1374aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=53254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea thiooxidans.;"
DNA-directed RNA polymerase subunit beta n=2 Tax=Bosea thiooxidans RepID=Q6XBL2_9BRAD
rpoB; DNA-directed RNA polymerase subunit beta
SCN18_26_2_15_R1_F_scaffold_1140_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12413..12793)
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YT73_9RHIZ
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
rplL; ribosomal protein L7/L12
SCN18_26_2_15_R1_F_scaffold_1140_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12843..13358)
DNA (516bp) protein (172aa)
50S ribosomal protein L10 n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003757087
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rplJ; 50S ribosomal protein L10
SCN18_26_2_15_R1_F_scaffold_1140_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13873..14571)
DNA (699bp) protein (233aa)
50S ribosomal protein L1 n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00034ABC75
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rplA; 50S ribosomal protein L1
SCN18_26_2_15_R1_F_scaffold_1140_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14585..15016)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A938_STAND
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
50S ribosomal protein L11
SCN18_26_2_15_R1_F_scaffold_1140_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15307..15840)
DNA (534bp) protein (178aa)
Transcription termination/antitermination protein NusG n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW92_9RHIZ
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
NusG antitermination factor
SCN18_26_2_15_R1_F_scaffold_1140_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15855..16049)
DNA (195bp) protein (65aa)
preprotein translocase subunit SecE n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036D7F8F
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
preprotein translocase, SecE subunit
SCN18_26_2_15_R1_F_scaffold_1140_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16184..16975)
DNA (792bp) protein (264aa)
Methyltransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBL6_9PROT
Methyltransferase {ECO:0000313|EMBL:EKE72147.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Methyltransferase type 11
SCN18_26_2_15_R1_F_scaffold_1140_trna_1
unknown

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comp(17001..17073)
DNA (73bp)
transferRNA Trp
SCN18_26_2_15_R1_F_scaffold_1140_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17135..18034)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DE3151
Uncharacterized protein {ECO:0000313|EMBL:KFC63746.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dihydrodipicolinate synthetase
SCN18_26_2_15_R1_F_scaffold_1140_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18225..18395)
DNA (171bp) protein (57aa)
Elongation factor Tu n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZS2_RHOVT
translation elongation factor Tu
Tax=RBG_16_Alphaproteobacteria_64_48_curated
Displaying 16 items

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