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SCN18_30_10_14_R3_B_scaffold_1235

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_B_scaffold_1235_1
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3..995
DNA (993bp) protein (331aa)
N6 adenine-specific DNA methyltransferase protein, N12 class id=12498528 bin=THIO_MID species=Thauera terpenica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
DNA methyltransferase {ECO:0000313|EMBL:GAO37586.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
N6 adenine-specific DNA methyltransferase protein, N12 class
SCN18_30_10_14_R3_B_scaffold_1235_2
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1522..2064
DNA (543bp) protein (181aa)
N6 adenine-specific DNA methyltransferase protein, N12 class id=12498528 bin=THIO_MID species=Thauera terpenica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Type I restriction-modification system methyltransferase subunit {ECO:0000313|EMBL:EXI80825.1}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
N6 adenine-specific DNA methyltransferase protein, N12 class
SCN18_30_10_14_R3_B_scaffold_1235_3
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2476..2802)
DNA (327bp) protein (109aa)
putative dissimilatory sulfite reductase id=12498529 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
dissimilatory sulfite reductase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCN18_30_10_14_R3_B_scaffold_1235_4
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3166..5646)
DNA (2481bp) protein (827aa)
aioA; arsenite oxidase subunit AioA (EC:1.20.98.1); K08356 arsenite oxidase large subunit [EC:1.20.9.1] id=12498530 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
aioA; arsenite oxidase subunit AioA (EC:1.20.98.1)
Tax=CG_Hydro_01
SCN18_30_10_14_R3_B_scaffold_1235_5
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5661..6182)
DNA (522bp) protein (174aa)
arsenite oxidase, small subunit (EC:1.20.98.1); K08355 arsenite oxidase small subunit [EC:1.20.9.1] id=12498531 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
arsenite oxidase, small subunit
Tax=CG_Hydro_01
SCN18_30_10_14_R3_B_scaffold_1235_6
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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6357..7220
DNA (864bp) protein (288aa)
phosphonate-binding periplasmic protein; K02044 phosphonate transport system substrate-binding protein id=12498532 bin=THIO_MID species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
phosphonate-binding periplasmic protein
Tax=CG_Hydro_01
SCN18_30_10_14_R3_B_scaffold_1235_7
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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7222..8634
DNA (1413bp) protein (471aa)
periplasmic sensor signal transduction histidine kinase id=12498533 bin=THIO_MID species=Thioalkalivibrio sp. ARh3 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
periplasmic sensor signal transduction histidine kinase
Tax=CG_Hydro_01
SCN18_30_10_14_R3_B_scaffold_1235_8
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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8624..9946
DNA (1323bp) protein (441aa)
Fis family transcriptional regulator id=12498534 bin=THIO_MID species=Thioalkalivibrio sp. ALJ17 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Fis family transcriptional regulator
Tax=CG_Hydro_01
SCN18_30_10_14_R3_B_scaffold_1235_9
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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10005..10538
DNA (534bp) protein (178aa)
sigma-70 family RNA polymerase sigma factor id=12498535 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sigma-70 family RNA polymerase sigma factor
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCN18_30_10_14_R3_B_scaffold_1235_10
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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10614..11669
DNA (1056bp) protein (352aa)
permease; K07089 id=12498536 bin=THIO_MID species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
permease
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCN18_30_10_14_R3_B_scaffold_1235_11
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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11693..11911
DNA (219bp) protein (73aa)
hypothetical protein id=12498537 bin=THIO_MID species=Thiomicrospira arctica genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=CG_Thiomicrospira_01
SCN18_30_10_14_R3_B_scaffold_1235_12
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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11929..12216
DNA (288bp) protein (96aa)
hypothetical protein id=12498538 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCN18_30_10_14_R3_B_scaffold_1235_13
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12241..12537
DNA (297bp) protein (99aa)
thiol-disulfide isomerase id=12498539 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase and thioredoxins family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCN18_30_10_14_R3_B_scaffold_1235_14
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12577..12996
DNA (420bp) protein (140aa)
redox protein, regulator of disulfide bond formation id=12498540 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
redox protein, regulator of disulfide bond formation
Redox protein, regulator of disulfide bond formation {ECO:0000313|EMBL:BAN36890.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCN18_30_10_14_R3_B_scaffold_1235_15
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13039..13506
DNA (468bp) protein (156aa)
hypothetical protein id=12498541 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36862.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCN18_30_10_14_R3_B_scaffold_1235_16
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13548..13784
DNA (237bp) protein (79aa)
thiol-disulfide isomerase/thioredoxin id=12498542 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase/thioredoxin
Tax=RIFOXYD12_FULL_Elusimicrobia_66_9_curated
SCN18_30_10_14_R3_B_scaffold_1235_17
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13836..14411
DNA (576bp) protein (192aa)
hypothetical protein id=12498543 bin=THIO_MID species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85090.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_30_10_14_R3_B_scaffold_1235_18
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14408..15283
DNA (876bp) protein (292aa)
major facilitator superfamily protein id=12498544 bin=THIO_MID species=Acidithiobacillus ferrivorans genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEM47879.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
SCN18_30_10_14_R3_B_scaffold_1235_19
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15582..16400)
DNA (819bp) protein (273aa)
ompR1; Transcriptional regulatory protein ompR id=12498545 bin=THIO_MID species=Ideonella sp. B508-1 genus=Ideonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ompR1; Transcriptional regulatory protein ompR
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCN18_30_10_14_R3_B_scaffold_1235_20
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16421..17248)
DNA (828bp) protein (276aa)
phosphate ABC transporter ATPase (EC:3.6.3.27); K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] id=12498546 bin=THIO_MID species=Methyloglobulus morosus genus=Methyloglobulus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
phosphate ABC transporter ATPase (EC:3.6.3.27)
Tax=CG_Rhodocyc_01
SCN18_30_10_14_R3_B_scaffold_1235_21
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17292..18947)
DNA (1656bp) protein (552aa)
membrane protein component of ABC phosphate transporter pstA-like; K02038 phosphate transport system permease protein id=12498547 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
membrane protein component of ABC phosphate transporter pstA-like
Tax=CG_Rhodocyc_01
SCN18_30_10_14_R3_B_scaffold_1235_22
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18959..21238)
DNA (2280bp) protein (760aa)
ABC transporter permease; K02037 phosphate transport system permease protein id=12498548 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ABC transporter permease
Tax=CG_Rhodocyc_01
SCN18_30_10_14_R3_B_scaffold_1235_23
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21362..21967)
DNA (606bp) protein (202aa)
signal peptide id=12498549 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
signal peptide
Tax=CG_Rhodocyc_01
SCN18_30_10_14_R3_B_scaffold_1235_24
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22036..23019)
DNA (984bp) protein (328aa)
ABC-type phosphate transport system periplasmic protein; K02040 phosphate transport system substrate-binding protein id=12498550 bin=THIO_MID species=Herminiimonas arsenicoxydans genus=Herminiimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ABC-type phosphate transport system periplasmic protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
Displaying 24 items

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