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SCN18_25_1_16_R1_B_scaffold_201

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Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_201_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

195..317
DNA (123bp) protein (41aa)
SCN18_25_1_16_R1_B_scaffold_201_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(666..1937)
DNA (1272bp) protein (424aa)
Acyl-CoA dehydrogenase n=2 Tax=Bradyrhizobium RepID=H5YIF7_9BRAD
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EHR02102.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
Acyl-CoA dehydrogenase-like
SCN18_25_1_16_R1_B_scaffold_201_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2170..2640)
DNA (471bp) protein (157aa)
Transcriptional regulator n=1 Tax=Celeribacter baekdonensis B30 RepID=K2J7X5_9RHOB
ArsR family transcriptional regulator {ECO:0000313|EMBL:KEJ93848.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
ArsR family transcriptional regulator
SCN18_25_1_16_R1_B_scaffold_201_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2637..3503)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QGA9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EPX78593.1}; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter arenae DSM 19593.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_201_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3750..5336
DNA (1587bp) protein (529aa)
Peptide ABC transporter substrate-binding protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YYQ1_9RHIZ
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:ERI15776.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
bacterial extracellular solute-binding s, 5 Middle family protein
SCN18_25_1_16_R1_B_scaffold_201_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5392..6381
DNA (990bp) protein (330aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Ochrobactrum intermedium RepID=C4WMU9_9RHIZ
binding--dependent transport system inner membrane component family protein
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:ELT47965.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
SCN18_25_1_16_R1_B_scaffold_201_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6378..7274
DNA (897bp) protein (299aa)
Binding-protein-dependent transport systems inner membrane component n=4 Tax=Ochrobactrum RepID=C4WMU8_9RHIZ
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EEQ93260.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
binding--dependent transport system inner membrane component family protein
SCN18_25_1_16_R1_B_scaffold_201_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7271..8911
DNA (1641bp) protein (547aa)
nikE; nickel import ATP-binding protein NikE (EC:3.6.3.24)
ABC transporter ATP-binding protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1X4N2_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ERI15779.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
SCN18_25_1_16_R1_B_scaffold_201_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8942..10255
DNA (1314bp) protein (438aa)
FAD dependent oxidoreductase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X468_OCHA4
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABS16022.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCN18_25_1_16_R1_B_scaffold_201_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10271..10762
DNA (492bp) protein (164aa)
L-2-amino-thiazoline-4-carboxylic acid hydrolase n=3 Tax=Ochrobactrum RepID=C4WMU6_9RHIZ
L-2-amino-thiazoline-4-carboxylic acid hydrolase {ECO:0000313|EMBL:BAQ67296.1}; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
L-2-amino-thiazoline-4-carboxylic acid hydrolase family protein
SCN18_25_1_16_R1_B_scaffold_201_11
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10778..11944
DNA (1167bp) protein (389aa)
Amidohydrolase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YUQ3_9RHIZ
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ERI15782.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
SCN18_25_1_16_R1_B_scaffold_201_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11994..13127
DNA (1134bp) protein (378aa)
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y184_PARAH
Putative lyase {ECO:0000313|EMBL:GAK69667.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
SCN18_25_1_16_R1_B_scaffold_201_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13191..13583
DNA (393bp) protein (131aa)
Endoribonuclease n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Z1D6_PARAH
endoribonuclease
Endoribonuclease {ECO:0000313|EMBL:AGT11251.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCN18_25_1_16_R1_B_scaffold_201_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13629..15284)
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000349988B
transcriptional regulator CadC
Lysine decarboxylase transcriptional regulator, CadC {ECO:0000313|EMBL:ABE63825.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_201_15
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15441..35129
DNA (19689bp) protein (6563aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000349D23E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIG57255.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCN18_25_1_16_R1_B_scaffold_201_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35138..36817
DNA (1680bp) protein (560aa)
hemolysin activation/secretion protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B5358B
Putative type Vb secretion system, beta-barrel domain protein {ECO:0000313|EMBL:KGJ68794.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_201_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36856..37545
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000347DD8D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL77947.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCN18_25_1_16_R1_B_scaffold_201_18
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37653..39539)
DNA (1887bp) protein (629aa)
Diguanylate cyclase n=1 Tax=Rhodovulum sp. PH10 RepID=J6LL44_9RHOB
Diguanylate cyclase {ECO:0000313|EMBL:EJW13398.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_201_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39557..40987)
DNA (1431bp) protein (477aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4PRK6_9CAUL
histidine kinase
SCN18_25_1_16_R1_B_scaffold_201_20
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41235..42731
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=Ahrensia kielensis RepID=UPI000360E171
Uncharacterized protein {ECO:0000313|EMBL:KIZ35901.1}; Flags: Fragment;; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
multi-sensor hybrid histidine kinase
SCN18_25_1_16_R1_B_scaffold_201_21
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42724..43110
DNA (387bp) protein (129aa)
Two-component response regulator n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89SW5_BRADU
Two-component response regulator {ECO:0000313|EMBL:KFC64604.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
PAS domain S-box
SCN18_25_1_16_R1_B_scaffold_201_22
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43210..43959)
DNA (750bp) protein (250aa)
membrane protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000374B3B1
Uncharacterized protein {ECO:0000313|EMBL:EJZ34522.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
porin
SCN18_25_1_16_R1_B_scaffold_201_23
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44349..45692
DNA (1344bp) protein (448aa)
Uncharacterized protein n=2 Tax=Asticcacaulis RepID=V4P2D7_9CAUL
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:KIZ42664.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
8-amino-7-oxononanoate synthase
SCN18_25_1_16_R1_B_scaffold_201_24
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46030..47274
DNA (1245bp) protein (415aa)
hemolysin secretion protein D n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000344D537
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACF00533.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_25_1_16_R1_B_scaffold_201_25
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47304..50423
DNA (3120bp) protein (1040aa)
cytochrome C peroxidase n=1 Tax=Afipia birgiae RepID=UPI00030CE340
Putative cation/heavy metal efflux system protein {ECO:0000313|EMBL:ABQ35113.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
cation/heavy metal efflux system protein
SCN18_25_1_16_R1_B_scaffold_201_26
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50312..50596)
DNA (285bp) protein (95aa)
SCN18_25_1_16_R1_B_scaffold_201_27
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50559..51974)
DNA (1416bp) protein (472aa)
Type I secretion outer membrane protein, TolC n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q139U7_RHOPS
Type I secretion outer membrane protein, TolC
Type I secretion outer membrane protein, TolC {ECO:0000313|EMBL:ABE39142.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCN18_25_1_16_R1_B_scaffold_201_28
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52240..53298
DNA (1059bp) protein (353aa)
Dyp-type peroxidase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NB80_AFIFE
Dyp-type peroxidase {ECO:0000313|EMBL:EKS27827.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
iron-dependent peroxidase
SCN18_25_1_16_R1_B_scaffold_201_29
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53291..54097
DNA (807bp) protein (269aa)
Linocin-M18 n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HQI6_PSEUO
Bacteriocin {ECO:0000313|EMBL:KIO48426.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Linocin_M18 bacteriocin protein
SCN18_25_1_16_R1_B_scaffold_201_30
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54164..54379
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLK3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62894.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying items 1-30 of 46 in total

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