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SCN18_25_1_16_R1_B_scaffold_727

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_727_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..171)
DNA (171bp) protein (57aa)
D-amino acid aminotransferase (EC:2.6.1.21)
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase {ECO:0000313|EMBL:ABJ06698.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABJ06698.1};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MY6_RHOP5
SCN18_25_1_16_R1_B_scaffold_727_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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427..675
DNA (249bp) protein (83aa)
RNA-binding protein Hfq n=7 Tax=Bradyrhizobium RepID=HFQ_BRASB
hfq; RNA-binding protein Hfq
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
SCN18_25_1_16_R1_B_scaffold_727_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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738..2102
DNA (1365bp) protein (455aa)
GTPase HflX n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QIM3_RHOPT
GTP-binding proten HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_25_1_16_R1_B_scaffold_727_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2199..3638
DNA (1440bp) protein (480aa)
succinate-semialdehyde dehydrogenase (NAD(P)+) (EC:1.2.1.16)
Succinate semialdehyde dehydrogenase {ECO:0000313|EMBL:ABE62658.1}; EC=1.2.1.16 {ECO:0000313|EMBL:ABE62658.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Succinate semialdehyde dehydrogenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM89_NITHX
SCN18_25_1_16_R1_B_scaffold_727_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3776..4600)
DNA (825bp) protein (275aa)
mazG; nucleoside triphosphate pyrophosphohydrolase (EC:3.6.1.19)
MazG nucleotide pyrophosphohydrolase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WWP7_9BRAD
MazG nucleotide pyrophosphohydrolase {ECO:0000313|EMBL:EAQ35591.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCN18_25_1_16_R1_B_scaffold_727_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4690..5421
DNA (732bp) protein (244aa)
7-cyano-7-deazaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; EC=6.3.4.20 {ECO:0000255|HAMAP-Rule:MF_01633};; 7-cyano-7-carbaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000255|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000255|HAMAP-Rule:MF_01633}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
7-cyano-7-deazaguanine synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=QUEC_NITHX
ExsB protein
SCN18_25_1_16_R1_B_scaffold_727_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5418..5804)
DNA (387bp) protein (129aa)
Nitrile hydratase accessory protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P488_9BRAD
Nitrile hydratase {ECO:0000313|EMBL:KJC35624.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_727_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5794..6462)
DNA (669bp) protein (223aa)
Nitrile hydratase subunit beta (Nitrilase) (NHase) {ECO:0000313|EMBL:CCE00467.1}; EC=4.2.1.84 {ECO:0000313|EMBL:CCE00467.1};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
nthB; nitrile hydratase subunit beta (EC:4.2.1.84)
Nitrile hydratase subunit beta (Nitrilase) (NHase) n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T1Z0_9BRAD
SCN18_25_1_16_R1_B_scaffold_727_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6462..7025)
DNA (564bp) protein (188aa)
Nitrile hydratase subunit alpha (Nitrilase) (NHase) n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SMM7_9BRAD
Cobalt-containing nitrile hydratase subunit alpha {ECO:0000313|EMBL:ETR77902.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
nitrile hydratase subunit alpha
SCN18_25_1_16_R1_B_scaffold_727_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7251..8057
DNA (807bp) protein (269aa)
Iron complex transport system substrate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HM32_9BRAD
Iron complex transport system substrate-binding protein {ECO:0000313|EMBL:ERF85863.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
enoyl-CoA hydratase/isomerase
SCN18_25_1_16_R1_B_scaffold_727_11
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8467..8865
DNA (399bp) protein (133aa)
HesB/YadR/YfhF n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SS21_NITWN
HesB/YadR/YfhF
HesB/YadR/YfhF {ECO:0000313|EMBL:ABA04920.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_25_1_16_R1_B_scaffold_727_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8880..9296
DNA (417bp) protein (139aa)
Blr4345 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89M48_BRADU
Uncharacterized protein {ECO:0000313|EMBL:KIF65938.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_727_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9284..10351)
DNA (1068bp) protein (356aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAW3_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS39737.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_727_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10468..11913)
DNA (1446bp) protein (482aa)
ATP-dependent RNA helicase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89M45_BRADU
Putative ATP-dependent RNA helicase {ECO:0000313|EMBL:KGJ69879.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
rhlE; ATP-dependent RNA helicase
SCN18_25_1_16_R1_B_scaffold_727_15
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12274..13818
DNA (1545bp) protein (515aa)
Peptidase C14, caspase catalytic subunit p20 n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137P3_RHOPS
peptidase C14, caspase catalytic subunit p20
Peptidase C14, caspase catalytic subunit p20 {ECO:0000313|EMBL:ABE39696.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCN18_25_1_16_R1_B_scaffold_727_trna_1
unknown

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comp(13919..14005)
DNA (87bp)
transferRNA Ser
SCN18_25_1_16_R1_B_scaffold_727_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14317..14775
DNA (459bp) protein (153aa)
Putative cytochrome c n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YNA9_BRASO
cytochrome c
Putative cytochrome c {ECO:0000313|EMBL:CAL75385.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCN18_25_1_16_R1_B_scaffold_727_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14956..15894
DNA (939bp) protein (313aa)
Rare lipoprotein A n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLT6_NITHX
rare lipoprotein A
Rare lipoprotein A {ECO:0000313|EMBL:ABE62811.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R1_B_scaffold_727_18
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15891..16850)
DNA (960bp) protein (320aa)
Epoxide hydrolase {ECO:0000313|EMBL:CCD88596.1}; EC=2.7.10.2 {ECO:0000313|EMBL:CCD88596.1};; EC=3.3.2.9 {ECO:0000313|EMBL:CCD88596.1};; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
Epoxide hydrolase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S319_9BRAD
epoxide hydrolase
SCN18_25_1_16_R1_B_scaffold_727_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17001..18248
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PNF5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39888.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
dac; penicillin binding protein
SCN18_25_1_16_R1_B_scaffold_727_20
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18248..18940
DNA (693bp) protein (231aa)
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase {ECO:0000255|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000255|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000255|HAMAP-Rule:MF_00165}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Thymidylate kinase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=KTHY_NITWN
SCN18_25_1_16_R1_B_scaffold_727_21
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18937..19977
DNA (1041bp) protein (347aa)
DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III, delta prime subunit {ECO:0000313|EMBL:ABD88253.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABD88253.1};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
DNA polymerase III, delta prime subunit n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214D3_RHOPB
SCN18_25_1_16_R1_B_scaffold_727_22
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20029..20937
DNA (909bp) protein (303aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Methionine--tRNA ligase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214D2_RHOPB
methionyl-tRNA synthetase
Displaying 23 items

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