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SCN18_25_1_16_R1_B_scaffold_734

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R1_B_scaffold_734_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(312..1943)
DNA (1632bp) protein (544aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
CTP synthase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZH9_9BRAD
CTP synthetase
SCN18_25_1_16_R1_B_scaffold_734_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2108..2482)
DNA (375bp) protein (125aa)
Preprotein translocase, SecG subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIF4_9BRAD
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EKS38153.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
secG; preprotein translocase subunit SecG
SCN18_25_1_16_R1_B_scaffold_734_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2637..3392)
DNA (756bp) protein (252aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
tpiA; triosephosphate isomerase TpiA (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PFK7_9BRAD
SCN18_25_1_16_R1_B_scaffold_734_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3753..5654
DNA (1902bp) protein (634aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215B7_RHOPB
PpiC-type peptidyl-prolyl cis-trans isomerase
SCN18_25_1_16_R1_B_scaffold_734_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5690..6703
DNA (1014bp) protein (338aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YJ98_9BRAD
SCN18_25_1_16_R1_B_scaffold_734_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6719..7525
DNA (807bp) protein (269aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
indole-3-glycerol-phosphate synthase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035C7641
indole-3-glycerol-phosphate synthase
SCN18_25_1_16_R1_B_scaffold_734_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7531..8034
DNA (504bp) protein (168aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JG30_OLICO
moaC; molybdenum cofactor biosynthesis protein C
Molybdenum cofactor biosynthesis protein MoaC {ECO:0000313|EMBL:AEI06442.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_25_1_16_R1_B_scaffold_734_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8066..9277
DNA (1212bp) protein (404aa)
Molybdopterin biosynthesis enzyme, MoeA n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X112_9BRAD
Molybdopterin biosynthesis enzyme, MoeA {ECO:0000313|EMBL:EAQ34074.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
molybdopterin biosynthesis protein MoeA
SCN18_25_1_16_R1_B_scaffold_734_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9478..10179
DNA (702bp) protein (234aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
LexA repressor n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I4A2_9BRAD
LexA family transcriptional regulator
SCN18_25_1_16_R1_B_scaffold_734_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10375..12663)
DNA (2289bp) protein (763aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000308E1DA
Uncharacterized protein {ECO:0000313|EMBL:EKS38161.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_25_1_16_R1_B_scaffold_734_11
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12967..14634)
DNA (1668bp) protein (556aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TFW0_9BRAD
SCN18_25_1_16_R1_B_scaffold_734_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14919..16340
DNA (1422bp) protein (474aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rule:MF_00022};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Glutamate--tRNA ligase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=SYE_RHOP5
SCN18_25_1_16_R1_B_scaffold_734_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16494..17798
DNA (1305bp) protein (435aa)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Citrate synthase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMG0_9BRAD
type II citrate synthase
SCN18_25_1_16_R1_B_scaffold_734_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17903..19117
DNA (1215bp) protein (405aa)
Putative Amidohydrolase family protein N-isopropylammelide isopropyl amidohydrolase {ECO:0000313|EMBL:CCD97950.1}; EC=3.5.99.4 {ECO:0000313|EMBL:CCD97950.1};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
cytosine deaminase (EC:3.5.4.1)
Putative Amidohydrolase family protein N-isopropylammelide isopropyl amidohydrolase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SUS3_9BRAD
SCN18_25_1_16_R1_B_scaffold_734_15
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19111..19563)
DNA (453bp) protein (151aa)
CMP/dCMP deaminase, zinc-binding n=3 Tax=Oligotropha carboxidovorans RepID=B6JHD8_OLICO
zinc-binding CMP/dCMP deaminase
CMP/dCMP deaminase, zinc-binding protein {ECO:0000313|EMBL:AEI06742.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_25_1_16_R1_B_scaffold_734_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19954..20688)
DNA (735bp) protein (245aa)
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase {ECO:0000255|HAMAP-Rule:MF_00392}; EC=2.4.1.182 {ECO:0000255|HAMAP-Rule:MF_00392};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Lipid-A-disaccharide synthase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=LPXB_RHOPB
Displaying 16 items

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