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SCN18_13_7_16_R1_B_scaffold_161

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Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_161_1
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(895..1236)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B3CE8B
Uncharacterized protein {ECO:0000313|EMBL:KIJ71956.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_161_2
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(1270..2193)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HQK5_9SPHN
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
SCN18_13_7_16_R1_B_scaffold_161_3
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2953..4083)
DNA (1131bp) protein (377aa)
tartrate dehydrogenase (EC:1.1.1.93)
Tartrate dehydrogenase {ECO:0000313|EMBL:ACB35254.1}; EC=1.1.1.93 {ECO:0000313|EMBL:ACB35254.1};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Tartrate dehydrogenase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZ84_LEPCP
SCN18_13_7_16_R1_B_scaffold_161_4
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4094..5005)
DNA (912bp) protein (304aa)
Lipase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TB32_ACIDE
Lipase {ECO:0000313|EMBL:EER58316.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_161_5
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5075..6154)
DNA (1080bp) protein (360aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Variovorax sp. CF313 RepID=J2L284_9BURK
Sua5/YciO/YrdC/YwlC family protein
SCN18_13_7_16_R1_B_scaffold_161_6
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6154..7338)
DNA (1185bp) protein (395aa)
phosphoribosylaminoimidazole carboxylase ATPase (EC:4.1.1.21)
5-(Carboxyamino)imidazole ribonucleotide synthase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122N3_POLSJ
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCN18_13_7_16_R1_B_scaffold_161_7
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7601..8092)
DNA (492bp) protein (164aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VU31_POLNA
SCN18_13_7_16_R1_B_scaffold_161_8
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8107..9114
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000374230F
Thioredoxin {ECO:0000313|EMBL:KJA10147.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
thioredoxin
SCN18_13_7_16_R1_B_scaffold_161_9
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9161..9925)
DNA (765bp) protein (255aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y323_RAMTT
ksgA; dimethyladenosine transferase
SCN18_13_7_16_R1_B_scaffold_161_10
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10137..11600)
DNA (1464bp) protein (488aa)
Chaperone SurA n=1 Tax=Acidovorax sp. KKS102 RepID=K0I5C1_9BURK
Chaperone SurA {ECO:0000256|HAMAP-Rule:MF_01183, ECO:0000256|SAAS:SAAS00043023}; Peptidyl-prolyl cis-trans isomerase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Rotamase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Flags: Precursor;; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
PpiC-type peptidyl-prolyl cis-trans isomerase
SCN18_13_7_16_R1_B_scaffold_161_11
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11593..13917)
DNA (2325bp) protein (775aa)
LPS-assembly protein LptD n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7X8_ACIDE
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
organic solvent tolerance protein
SCN18_13_7_16_R1_B_scaffold_161_12
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14033..15208
DNA (1176bp) protein (392aa)
Aminoglycoside phosphotransferase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CS98_VARPS
aminoglycoside phosphotransferase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCN18_13_7_16_R1_B_scaffold_161_13
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15272..16426
DNA (1155bp) protein (385aa)
Receptor family ligand-binding protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X802_9BURK
Receptor family ligand-binding protein {ECO:0000313|EMBL:EFF77098.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
branched-chain amino acid ABC transporter substrate-binding protein
SCN18_13_7_16_R1_B_scaffold_161_14
SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, Kapabacteria

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16452..17345
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JSW5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR70457.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
Glutamine amidotransferase
SCN18_13_7_16_R1_B_scaffold_161_15
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17355..19523)
DNA (2169bp) protein (723aa)
ATPase P n=1 Tax=Variovorax paradoxus RepID=UPI0003797106
heavy metal translocating P-type ATPase
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCN18_13_7_16_R1_B_scaffold_161_16
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19578..20033
DNA (456bp) protein (152aa)
Putative transcriptional regulator n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGD0_METPP
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:ABM94619.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCN18_13_7_16_R1_B_scaffold_161_17
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20092..21387
DNA (1296bp) protein (432aa)
pyrimidine permease n=1 Tax=Variovorax paradoxus RepID=UPI00036B55EF
Uracil-xanthine permease {ECO:0000313|EMBL:EJL70915.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
uraA; xanthine/uracil permease
SCN18_13_7_16_R1_B_scaffold_161_18
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21449..21916)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK87_9BURK
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_161_19
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21913..23985)
DNA (2073bp) protein (691aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK86_9BURK
TRAP transporter
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_161_20
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24098..25057)
DNA (960bp) protein (320aa)
TRAP transporter solute receptor, TAXI family n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK85_9BURK
TRAP transporter solute receptor
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
SCN18_13_7_16_R1_B_scaffold_161_21
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25149..25730)
DNA (582bp) protein (194aa)
ATP--cobalamin adenosyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003650EAA
ATP/cobalamin adenosyltransferase {ECO:0000313|EMBL:GAD22698.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ATP:cob(I)alamin adenosyltransferase
SCN18_13_7_16_R1_B_scaffold_161_22
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25738..26187)
DNA (450bp) protein (150aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000313|EMBL:CDS52981.1};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Desulfovibrio desulfuricans RepID=UPI0003B4542B
SCN18_13_7_16_R1_B_scaffold_161_23
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26492..26773
DNA (282bp) protein (94aa)
Plasmid maintenance system killer n=1 Tax=Acidovorax delafieldii 2AN RepID=C5SZJ8_ACIDE
Plasmid maintenance system killer {ECO:0000313|EMBL:EER62394.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
plasmid maintenance system killer protein
SCN18_13_7_16_R1_B_scaffold_161_24
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26797..27108
DNA (312bp) protein (104aa)
Plasmid maintenance system antidote protein, XRE family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5SZJ9_ACIDE
Plasmid maintenance system antidote protein, XRE family {ECO:0000313|EMBL:EER62395.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
XRE family plasmid maintenance system antidote protein
SCN18_13_7_16_R1_B_scaffold_161_25
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27148..27369)
DNA (222bp) protein (74aa)
ATP--cobalamin adenosyltransferase n=1 Tax=Caldimonas manganoxidans RepID=UPI0003627CDD
cob(I)alamin adenosyltransferase, putative
Tax=CG_Rhodof_04
SCN18_13_7_16_R1_B_scaffold_161_26
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27499..28329)
DNA (831bp) protein (277aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Shikimate dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKJ7_9BURK
aroE; shikimate 5-dehydrogenase
SCN18_13_7_16_R1_B_scaffold_161_27
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28403..28831
DNA (429bp) protein (143aa)
Phenylacetic acid degradation-related protein id=1278976 bin=GWE1_Burkholderiales_65_30 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
phenylacetic acid degradation-like protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCN18_13_7_16_R1_B_scaffold_161_28
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29006..30430
DNA (1425bp) protein (475aa)
Candidate D-lactate dehydrogenase (Cytochrome) n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y2H2_RAMTT
dld; D-lactate dehydrogenase (cytochrome)
Candidate D-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:AEG91146.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_13_7_16_R1_B_scaffold_161_29
SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, Plasmid-like

Not on your lists

comp(30511..31809)
DNA (1299bp) protein (433aa)
phosphatidylinositol kinase n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00037151F8
HipA domain-containing protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCN18_13_7_16_R1_B_scaffold_161_30
SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, SCNPILOT_EXPT_500_P_Plasmid_65_940, Plasmid-like

Not on your lists

comp(31809..32135)
DNA (327bp) protein (109aa)
Putative DNA-binding protein n=2 Tax=Bordetella bronchiseptica RepID=K4QNR2_BORBO
DNA-binding protein
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:KDD50243.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
Displaying items 1-30 of 126 in total

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